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11-5545-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 535542 [Map]; Strand: c
      • AT1G02540.1 - [+] show detail - unknown protein; Has 3327 Blast hits to 2216 proteins in 265 species: Archae ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G02550.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: -941; Region: promoter
    Flanking Genome Sequence: 11-5545-1 - 5-prime edge 
    CTTTANAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCG GTTTCAGGAT CCACAATGGA TCAAAACATG 
    GAGGAATATG CGGATGAGCT CGAAAATATG CTTGATGAAG AACAAGAAGA 
    AGAAGATGAT AGGGCCATTC AACAACAACC TCCAGAGATT CCTCTTCAAG 
    GTCATGATTC AAGATCCACA TTGGATAAAC ATATGGAGGA ATATGCNGGA 
    TGATCTTGAA AAGATGCTGG ATGAAGAAGA AGAAGGAGAT GATGATAGTG 
    CCATTCAACA ACAACACCTA GAGATTCATC TTCAACTTCA AGATCATGGT 
    TCAAGATCCA CAACGGATCA AAACACGGAG GAATATGCAA ATGAGCTCGA 
    AAACATACTG GATGAAGAAG AAGAANAAGA TGATGATGAT GATAGGGGCA 
    TTCAACAACA AGATTCACAG ATTCCTCTTC CGGTTCAAAG TCAAGATTCA 
    GGGAACCCGC TTGTTGTAAT CATGGAAGAT GAACGTGTNG ACCANGATAT 
    GATCTNTGAT CCTGGTTNAC AAGGANGAAG AANAGAGGAA GCTGANAACC 
    GTNTACTTGA NATNNGTTGN CGCAGGATTG AAGACGCANA AGAACCNTCC 
    ACTTTNAACG ACTCTTATTT TNGCAGGAGG TCANGAGATG TCTNCCTNGG 
    GANNACNTGG GNGACCNACA ACANTTCCTT TNGGGGCNAG TGTTCAANAC 
    CCCTTGGGCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 535593 [Map]; Strand: c
      • AT1G02540.1 - [+] show detail - unknown protein; Has 3327 Blast hits to 2216 proteins in 265 species: Archae ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G02550.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: -890; Region: promoter
    Flanking Genome Sequence: 11-5545-1 - 3-prime edge 
    CTTGATATTG TTGTGTAGTG GTGGTTGCTC AACGAGGTTG TTGTTGTTCT 
    CTGTCGGGAA CTTAAATTGG TCAAGGACGT TCTTCTTCAT ACGGATATTA 
    CACAAGGCAA CTTCTTGGAA TTCAGCATCG TTCTCACTCG CTAGCCAATA 
    CTCAGTCATA CACCAACCAG TGGCTTCTCC CTTTGGCTGT CCTTTTACAT 
    GCTTGCAGTA CGAGACTTCC TGTTTATATC CTATCACAAC GGTGTTACTG 
    AAGATC

AT1G02540.1

Model type
Protein coding
Computational Description
unknown protein; Has 3327 Blast hits to 2216 proteins in 265 species: Archae - 18; Bacteria - 202; Metazoa - 802; Fungi - 283; Plants - 84; Viruses - 187; Other Eukaryotes - 1751 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02550.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT2G47340.1); Has 183 Blast hits to 176 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR