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11-5553-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1106828 [Map]; Strand: c
      • AT3G04210.1 - [+] show detail - Disease resistance protein (TIR-NBS class)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-5553-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TNGNACANGA CAGGTTAAGA GACAAGAGAG 
    TGCTTGTTGT GCTNGATGAC GNNGATCAGN CANCACAATT AGAAGCCATG 
    GCCAAGGAAA ATAAGTGGNT TGGTCCTGGA AGTNTGGATT ATCATCACCA 
    CGCAAGATCG AAGACTTTTG AAAGCACATG GAATCAAAGA TGTGTACAAG 
    GTGGATTTAC CACCACCTGA TGATGCTTTT CAAATCTTCT GCATGTATGC 
    TTTTGGTAAA ACCTCTCCAA AACATGGTTT CGAGGAGCTT GCATGGGAAG 
    CTACATACCT TTCTGGTATA CACCCTTCGG GAATAAAAAG TATGGGCTCT 
    TATTTCCGGA AAATGTCAAA ACCGGAGTGG GTAAACGCGT TACAAAGGTT 
    AAGGACTAGT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1106843 [Map]; Strand: c
      • AT3G04210.1 - [+] show detail - Disease resistance protein (TIR-NBS class)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-5553-1 - 3-prime edge 
    ACGAGGTGTT TTACCGACCG TTACCGACCG TTTTCATCCC TNCTAAGTGA 
    GGAACTTCTA CATCCTTCTG GTTGAATATT TGAGACAGAA ACTGCTGATG 
    TAAGTGCAGC TTAAGACCGT GTTCATCCNA ACAACCTGGT CTTGTATAAC 
    CCTTGACAGT CTCCATAAAG ACACTCAAAT CGAAACTGTC AGAATGTTTT 
    CGAAATANAA CTCTGGCGAT GGAAGTCTTA CCAATCCCAG GAGGACCCCA 
    AATCCCTATC ATCCTCACAT CATTCAGATC TAGGTATAAC ATTCGTTCCA 
    ATTCTTTCAT ATGATCCTNC ATCCNAACTA AGTCTCTGAA ATCACTTGAC 
    GGCGNNNGAG ATGTNCAACG TATTTGAAAT ATCANTGGTG ANTATNNCNA 
    TCATGNNCNC TGTNATTATC CCTAAAANAC NGGTGGTNNT ANAAATANCC 
    NANAATTNNA TACTNTNNAN NCTTTANANA CATNGTATGT TATAGTAAAG 
    ANNGNTNATT AGNTGANNNN GTNTTNNTAN NGNGTACTNN NCNCNTCCNA 
    ANTNNACTNT NNNCNTTNTA CATTNANTGA ACANNNAANC NNANGANGTN 
    ANAGCNNNGC CNTNCNANCA NNGCACNNAN NAGGCANTTT CTTGNCNTNG 
    TTCCNGANGC GCNCNTGTNN NNNAAANTNT TNNNNTGTAT NNNCNNTNNG 
    AANTACCTAT NNNGNANNNA NTGTNGNGNN CNANNNANCT NTNTNCNGNT 
    NNTGNTANCG TTTNNCNNCG NNNNTATCCA TAGNTATNAG ANANGNG

AT3G04210.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS class)
Computational Description
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 7287 Blast hits to 7131 proteins in 234 species: Archae - 2; Bacteria - 61; Metazoa - 8; Fungi - 0; Plants - 7211; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR