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11-5567-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18170604 [Map]; Strand: c
      • AT4G38990.1 - [+] show detail - glycosyl hydrolase 9B16
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5567-1 - 5-prime edge 
    CGTGGAGCGC TATCGACTTC GGAAGTTACA TGTCTCCGGC TGATCTCCGG 
    GACAATCTCG TCGCTCTCCG GTGGGGCAGC AATTATCTCC TCAAGACCGT 
    TTCCCAACTC CCTAATCGCA TCTTCGTCCA AGTACNGGTG ACTATACGTC 
    AATAAGCTCT TGTCTTTTAT TATACATGTA TTTATAGCTT AGGATAGTTA 
    ACAACGATTG TATTTGTGTG TCTTTTACAC ATACATCTAG TTCTCACAAA 
    TTTTACTTTA GATCTTAGAT TCGTAATGTA TTTGTTCATA TCACAAACAA 
    TTATTATCTT GTTTTTTTTT CCATCTNAAT ATTGTTACTT ATTTTTTGTT 
    NGTTTTTACT TGTTAGTAAT TAACTAATTT ATTTAACNAG GCTATAATAT 
    TCATAANAGT TAAACTGATG CATATATATN GANAATTTGA TTTATAATCT 
    TAAATAATGA TATTTAGGTA GGNGAACCAA CACCGGATCA TCAGTGTTGG 
    GAGAGACCAG AGGACATGGA CACACCACGG ACCGCTTACG CACTGGAAGC 
    ACCGAAACCA GCCTNTGATT TAGCTGGAAA AATCACAGCT GCGTTGGCAG 
    CCGCCTCAAT CGCATTCAAA CGATTNGATC CTAAAAATTC TAAACTATTG 
    GCTCNATAAT GCTTTAAAAA ACTTTTGAGT NCNCAAATTC ACNTNGAGGG 
    TCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23355197 [Map]; Strand: w
      • AT5G57660.1 - [+] show detail - CONSTANS-like 5
        Distance: -267; Region: promoter
    Flanking Genome Sequence: 11-5567-1 - 3-prime edge 
    GCTCCACGCA AGCATCGTAG TCGTAAAAGC CATCGGAAAA TGGAATTTAA 
    TGTTGTCTCC GGCGTCGTAG TAACCACCAA CTATNATGTC GGTATTGAAT 
    TATGTTTTGT TTTGGCTGTN NTATTTGNTA ATGAATANAA ATAAANTTNT 
    AATTAATAAA CGTTCATATG TTCTTGANGC ATCATTTCGT NTATGGACCG 
    ATACTAGCTT ATAGTCTNCT TTNCAAACAT GATTTCAAAA TTTATTATGT 
    CAATGACTCA AATTCTTCTC ACCAAACTAA ATATTAAACT NTGATTTATT 
    NTTATTTTTG CGTGTGTATG CATATAACTT GTACATCCTT AAATGANATA 
    AGCTAAAGCT

AT4G38990.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9B16
Computational Description
glycosyl hydrolase 9B16 (GH9B16); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B17 (TAIR:AT4G39000.1); Has 1522 Blast hits to 1511 proteins in 198 species: Archae - 2; Bacteria - 400; Metazoa - 176; Fungi - 17; Plants - 897; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57660.1

Model type
Protein coding
Short Description
CONSTANS-like 5
Computational Description
CONSTANS-like 5 (COL5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 4 (TAIR:AT5G24930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR