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11-5778-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10639519 [Map]; Strand: c
      • AT5G28635.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-5778-1 - 5-prime edge 
    ACAATGAGAA CACTGAACAG GACGAGACTT GATAATAGAA GAATCAACAT 
    GATTCCCATA TTGGACTTCA GACTGTGTAG AAGAAGATGC TATCGAAGAG 
    TTCTCGCGAC GAGTAACAAA ACCGATTGCC TCTTGTCGCT GTTCTTGAGC 
    CCGTGAAGAA CCAAGCCTCT GTTCTTCTCT GATTACTTTG GAATAAGCAA 
    CGCCAAGGAG AGGCAGCGGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10639635 [Map]; Strand: c
      • AT5G28635.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-5778-1 - 3-prime edge 
    CTCATTGTGG ACGTACGGGT CATGAGAAGA AAGACTGTTG GTCCATTGTA 
    GGATTTCCAG ATTGGTGGAC AGATCGTAAT GGTGGCGGTC GTAACTCGGG 
    TGGACGCGGT CGTGGCGGAC GTGGTGCTGG TCGAGGTCGT GGCGGACAAA 
    CACCAGTGGC TCACGCAACA AGCGCCAATC CAACTTCTTT CTCGGACTTT 
    ACATCGGATC AACTTCAAGC TCTCTCTCTA ATGATTCAAG AGAAAACATC 
    CACCGGCACC TCTGATAAGT TGTCTGGTAA GACGATGCTT GGCAATGTTA 
    TTTTTGACAC AGGGGCTTCT CACCATATGA CTGGGGGACT TTCTCTTTTG 
    ACTAACATCG TCCCTATTAC ACCTTGTTCT GTGGGTTTTG CGGATGGTAG 
    CAAAACTTTT GCCTTAAGTA TGGGCAGTTT CCCGCTGTCG GAGAAACTTA 
    CATTAACCAA TGTGCTTTAT GTACCAACAT TGAATTGCAC ATTAATTTCA 
    GTCTTTAAAC TCGTTAAACA AACAAAATGT TTGGCATTGT TTTCTGATAC 
    AATCTGTGTT TTATAGGATC

AT5G28635.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.1e-162 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR