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Mutant Lines
11-5892-1

11-5892-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2342455 [Map]; Strand: c
- AT3G07340.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: 0; Region: exon2 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATATCC TTACAAAGAT TACATTCATG TTAGAGCTCG 
ACGAGGCCAA GCCACCGATA GTCACAGTCT CGCCGAACGA GTCAGTCAAT 
TTCCTATTTT CTTACCAAAT TANNNGANNG GNNNGTTAAN GNNNNATGCC 
GTCCTGATTA GTTGAATTAA TCATGCTTTG TATTCAATGT GTTGTTGTGA 
TTTCGATATT AAAAAGGTTC GAAGAGAGAA AATAAGCGAA AGAATGAAGC 
TGCTTCAAGA TCTTGTCCCT GGATGCAACA AGGTGAGAGT TTGATTAAAC 
AACTAATTAA CTCGTTTTTA GTTGTACTAA TATAGTTGTG ATTAGAGCAA 
TAACAAATTT ACTTTTTAAA GGTTACTGGA AAAGCACTGA TGTTGGATGA 
AATTATAAAC TATGTCCAAT CATTGCAACG ACAAGTTGAG GTAATTACTC 
ATTAGATTAT TGGTCTACTT TAAACTCTTT CCATTATTTC ATAATCACTT 
TTTAAAACAA CTACACGACT TCGAATAATT TTTGTTTCTT AATTTTAATT 
TCAAATATGG TGCAGTTCTT GTCGATGAAG TTATCGTCAG TGAACACCAG 
GCTGGACTTT AACATGGACG CTCTCTTGTC TAAGGATGTA AGTCACCGNC 
CCAACATTTA TAGTAATTTT AATTGACAAT TATTGGAATA ATAATACTTT 
NGTGTCTTTG NGAACNAATC GNGTGTTTGN TN

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 2342472 [Map]; Strand: c
  - AT3G07340.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 11-5892-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
TAGTTTTGTC TCCATTTTCT TCTGATTTTT TGCATCTCTT TGGATCAGAA 
TCTTCCTTCT CTTCAATCTC CTGATAATCA AACTAAAATT AGTATTTGTT 
TAAACCAAAC AAAAAATGGG TTTATTCGAA TGTAAAGCT
```

AT3G07340.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G48560.1); Has 2639 Blast hits to 2308 proteins in 133 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 52; Plants - 2177; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).
Link: InterPro Scan - TAIR