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11-5907-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26439048 [Map]; Strand: c
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: -284; Region: promoter
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon25 (CDS)
    Flanking Genome Sequence: 11-5907-1 - 5-prime edge 
    TAAATGACAA GTCGACTTTA GTAGTAGAGC TTGGTCCCAT GGAGATTCGT 
    ACATTTGTGG TTCAGTTTTA TCAGAAACAA CGTAGAAGAA GAAAGTTGTT 
    TGTGGGATGA TTGCGCCAAT ATGTTTGTAC AATGTTTTAA ATCATTCATT 
    CATCAACGGT TTGGTTAGTT AGAAAGCGCG GGAGGAAGGT TCATGTATTT 
    TTCAATCGAC CATTATACTG TGTTAATGGG CCTGTTATGG AAGTTTTGGG 
    TATATAAGGC CCATTTAAAG GAAATGATGA GTGCGCGATT TGTCTCTCTT 
    CTCAAAAACT TGAAGATCTG AGTAGAGTAC TTCCTTCTTC TTTTTTTTTT 
    TTTTTTTTTC GGNNNNGGGG GGGGGNNAAA AANGGGGNTT NCTTTTTTTN 
    NAATTNGCCC CNAAAANNAA AAAAAAAANN NAANGGGGGN NAAAAAANGG 
    GTTNNNTCCN TTNNNCCTTT TTTNTTTTTT NCCCCNANGG GNNNCTTTTT 
    TTNTTNNAAA ANCCCCCNTT ANCCCNCCCN AAGGGGTACC CCCCCCNNNG 
    GGGNCCNNNN NCCCCCCCCN NTTTNCCNCC CCCCCNAAAA AAAATNCCCC 
    CC

AT5G66140.1

Model type
Protein coding
Short Description
proteasome alpha subunit D2
Curator Summary
Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational Description
proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR