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11-5918-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1483795 [Map]; Strand: c
      • AT1G05140.1 - [+] show detail - Peptidase M50 family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5918-1 - 5-prime edge 
    GTTCCAATAA GATCAGAGCC AAAGTTCCAC CATCGAGAGC CGGTAAAGGC 
    AACAGATTGA TCACAGCAAG GTTTAGATTC AGCAATGCTG CAAACTGGTA 
    AAGCCCGTCC GCGTTTGATC TCGCTACTTC TGCTCCAACC GCAATAATCG 
    CCACTGGACC AGCGACTTTA CTAGCGGTTT GAGAGAAGTT CAAGAAAGTC 
    TGTTTCAAAC TATCCAATAC ATTGTAAGAG AGCCCAAAGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1483920 [Map]; Strand: c
      • AT1G05140.1 - [+] show detail - Peptidase M50 family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5918-1 - 3-prime edge 
    GGTTCGAGGC GGGAGGAAAT TACCGTTAGA GGTGGAGCAA GGGATTATGT 
    CTTCTGGAAT CATGCTTGTA TTATTTCTCG GTTTATTTCT CATCGTAAAG 
    GACACACTTA ATCTTGATTT CATCAAAGAA ATGTTGTAAG CTATTGAGGT 
    ATATAGAAGA AACAAAAAAG TATTTTGAGA GTTATAAAAC CAGTGATATA 
    TAAAATCAAA TTCTAAATTT GCAAACTGAA ATTGGTCTAA AACGCAATTG 
    CGTGATTTAC CAAAACAACA TTGTGCAGTC TCATCAATCA TCATCATACA 
    CTTAAACTGA AACTATGCAC ACAAGTTAAA AAGAAAGTGT TACAATTTTC 
    AAATTAGACA CAAAGATTGG AGTAGACAGA CACTTGATGA GTTAGTTTCT 
    TTGTTCCTTC TATCAAGTGG CAATCGCTTT TTTATGAGAT TGCATCGAGA 
    AACATACACA CTTAGCTTTC ATGGCTTCAG CTTCACTCTC ATATTCTCGG 
    AACTTGTATT CCTCTTGTTT AAACGAAGGA GGAACCTTCC CTTCACTGTA 
    ACACTGGTTA CACAAACTAA ACCGGGCTTT CACTTCCTTA AACCGGGATC

AT1G05140.1

Model type
Protein coding
Short Description
Peptidase M50 family protein
Computational Description
Peptidase M50 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS SERIN PROTEASE (TAIR:AT2G32480.1); Has 10190 Blast hits to 7652 proteins in 2240 species: Archae - 41; Bacteria - 6892; Metazoa - 13; Fungi - 4; Plants - 72; Viruses - 0; Other Eukaryotes - 3168 (source: NCBI BLink).
Link
InterPro Scan - TAIR