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Mutant Lines
11-5926-1

11-5926-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 23401699 [Map]; Strand: w
- AT3G63360.1 - [+] show detail - defensin-related
  Distance: -108; Region: promoter
- AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: -377; Region: promoter

GTTTCAAGGA GAAATTAATT AACGGAGAAT AGAGCTGAAG GAGCCGCGGG 
TGTGTCTCCG CACGTCATCT ATATATAATC ATGCGTTCGT TTTTGATTGA 
CATGTTCTTC TTTGGTGTAG CACTAAACCT AAAAGTCAAC GAAACATAAG 
AAACAAAAAA ATGAGGAAGA CGATCAGCTT CTCAGCCATA ATCCTCGTAT 
TCTTATTGGT TTCCACAGGT ACATGCATAC TCTCAATCAA ACTGCAACCC 
GATCTGGAAT AACATCATAT ATTTTATTGC TGTGTATACA TATAGGATTG 
ATGGAGCAAG GAGACGCGCA AGCGCAAAAG TGTGAGTGGG AGTGCAAGCT

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 23401815 [Map]; Strand: w
  - AT3G63360.1 - [+] show detail - defensin-related
    Distance: -224; Region: promoter
  - AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: -261; Region: promoter
Flanking Genome Sequence: 11-5926-1 - 5-prime edge
```
CTTGAAACCC GCTTACTTGT GAATAAAGTA ATCTTCTCTG ATTTATATTT 
GCCAACCTTA TGATCCTGAT GTTTTTGGGT TTAAGCAGTT TAGAATAACA 
GTTTTTGATT CGTTCGTCCA CACNGTCCTT ATCGTATGAT CTGTTAATTT 
GATATGCATA TTTACAGAAA CGGGCCCTAG TGCTTGTTGT TGAATATGGG 
CCTGGTCTGG CCCATATTAC TATCTCAGAA GTTAGATCAG AAGCT
```

AT3G63360.1

Model type: Protein coding
Short Description: defensin-related
Curator Summary: Encodes a defensin-like (DEFL) family protein.
Computational Description: defensin-related; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63370.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a chloroplast RNA editing factor.
Computational Description: ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 44; Fungi - 62; Plants - 47536; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).
Link: InterPro Scan - TAIR