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11-5999-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16887780 [Map]; Strand: c
      • AT5G42240.1 - [+] show detail - serine carboxypeptidase-like 42
        Distance: -446; Region: promoter
    Flanking Genome Sequence: 11-5999-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCACGGTA ACCGTTCTTT CCCAAACCGG TATAAAACCA 
    AATTTCCTGA ACTTTTGGGT TTCAATCTGG TTAGATGGAT GCAACGATTG 
    TGTTTTTTCC TTACTCTCTC TCTAATGTTA TTACCAATTT TTCTTTTGTT 
    GTATGTTTTT ACTTTTTAGT GATCAAATTG ATACATGTAC AATTCAGTTT 
    TTCATTAAAC AGATTTTTAC TGTATACGTT AATAAAAAAA CAAGTACTTA 
    TTTTGCATGC AAAATTCGCT CGAGTTTCTT TTTTTTTNAA AACTTTGATT 
    NGGTACAATN GGNGTATTAT GACTTCNATN TATGTANACN CTANACACTA 
    NACCAGNGAN AAACGATTAA TCTTNGGAGA TAAATCAAAT TANGGANAAN 
    AAAAACTAAT AAATTCACAA ATCTTNGGAN ATNAAACTAG NGATATTATT 
    ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16895930 [Map]; Strand: c
      • AT5G42250.1 - [+] show detail - Zinc-binding alcohol dehydrogenase family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-5999-1 - 3-prime edge 
    TGTACAGAGT AGTGGAAAGT GTTGGTGAAA ATGTGAAGGA AGTGGTAGAA 
    GGAGACACCG TACTACCAAC GTTCATGCCT GACTGTGGTG ACTGTGTTGA 
    TTGCAAATCT CACAAAAGCA ACTTATGTAG CAAATTTCCT TTCAAGGTAT 
    CCCCTTGGAT GCCAAGATAC GATAATTCCA GCAGATTCAC CGACCTCAAT 
    GGCGAAACTC TCTTTCATTT CTTGAACGTC TCCAGCTTCA GCGAATACAC 
    GGTTCTTGAT GTCGCTAACG TTGTTAAGAT TGATTCTTCG ATTCCTCCTA 
    GTCGTGCTTG CCTCCTAAGC TGCGGAGTCT CCACCGGTAA ATCACTAATA 
    TTGGAAAAAC ATTATATATT CAACGTTTGT TACTCTTTGA TTTTGATGGA 
    GTTAGATTAA CTTTTCCTTA GGTGTTGGTG CTGCTTGGGA GACCGCCAAA 
    GTTGAAAAAG GATCAACTGT TGTGATTTTC GGACTTGGTT CTATCGGATT 
    AGCGGTAAAA TTACAATTTT CAATTATGAT CTTGTAATAA TAAGTCGTCT 
    TAATCTAACT AGACTCACAT AACTAGACGC TTTGTGTGGG TTTTTCTGTC 
    CCATGTTTTA NTTGTTANAA ACATCNTTTG AATCAAGGAT GCATATAATA 
    TAAACATGGN TTGTTTGGNT GATAANTTNT TACATTCTTC AAAAATNNAA 
    TAAAATNNNT NG

AT5G42240.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 42
Computational Description
serine carboxypeptidase-like 42 (scpl42); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 41 (TAIR:AT5G42230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42250.1

Model type
Protein coding
Short Description
Zinc-binding alcohol dehydrogenase family protein
Computational Description
Zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT4G22110.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR