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11-6034-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30041198 [Map]; Strand: w
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon10 (3UTR)
    Flanking Genome Sequence: 11-6034-1 - 5-prime edge 
    ATTATCCAAC ACCTTTTTGG TCCATTCCAT TGGCAAATGA ACCATAACAA 
    GAGGAGCAAG AACCGTAGAA TTAGCAGAAA CAAAATTCGG ATCACTGAGA 
    CCACAAGCAC ACAGTAGCAA CAGAAACATA TTAATTCACA TTCTAAATGT 
    AACTGGAGGT GAAGATGAAG TAAGAGCAAA CAATTGGTAG TCGGAAACAA 
    TCAGATTGAA AACACACTCA TGGCATAAGC AATGAAATCA CAAAAGCATT 
    CCATAAATTA CACTGGTTCC GGGATACACA ACAAACAAAC AGAAGCAGAG 
    CAAAAAAAAG ACGGCTTTAC CAAAAGAAAC AAAGAGCAAT CATTCTCTAC 
    GCCGGCTGCT GAGACTCCAA GGGAAGGCCA AGGAGTTCAT CTCCTCCGGC 
    TTCGGCTTTC CTGGCGGCCC TTGCGATGAC AGGAAGCGCC ACAAATGATT 
    TAGTCTTACT GATGGGTCTG CTCTTTTCCA GTCTGACCAC GTCGCCAACC 
    TTGAACTGAT TATCGGGGTC GTGAGCTTGG TACTTCTTCT TCATCCTCAC 
    GCGCCTCTTG TACTTGGGGT GGGGAGCCAG CCTCACCACC TNCACCGCCA 
    CAGTCTTGTC ACTGGTTGCG CACACCACGC GCCCCTGCAT CGTTTTCATG 
    GCTCTGATGA CCGGAACTAA AGCGGGCATT CTGTGGTTCG GGAAGGAACT 
    GGGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30041082 [Map]; Strand: w
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon10 (3UTR)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 11-6034-1 - 3-prime edge 
    TGGATAATAA TAGGATTGGA GAAGAGAGAG CTGGTCGTTT TTGTACAAAA 
    CTTTAATGCA CTGCTGCTAT ACATTATCAT ATAATTATAT ATAGGTAAAT 
    AATATCTGCT GTGACTTGTC ATCAGCAATC TTCGATTTGT AGACTTCTCT 
    TAATGTTGTG TAGTGTGACT GAGACGAGGT TTGTCACGGA TTCCACAGAC 
    TCCATATTCA GCTTTGCTGC AGGAGAAGGG TTGATGAGGG TTTGGAGGGC 
    GAGTGTCAGG AGCGACCCTC CTTGGCTGTT TCTGTCGTCT TGTGTAGACG 
    TTATTACCAG TGGCCGTGAC TCTACTCCAT CAGGTATGAT TGAGAATCCA 
    GAGGGGAGGA TTTGGATGTT GCTTGGATCA TGTCCCGCGA GCACCAGCTG 
    TGTCGTGTTT ATATCTACGG GAGCGTATAC CACCACCGAC TCATACGAGT 
    TAGTGCTGCT GTCTTGCANC ACCCATATGC TCTTTTCTCT CGATTTCACT 
    GTCTGGAAAT GTATANAAAT TCANATTATC AAGGCCTANA CNGATTTANA 
    GGAGGAGAAN ACNNNNTNNA CGCACCTGGA TTGCCACTGA NTTGCCTCTG 
    NCTTGTCCCT TGGATAANTN NGCNNTNNAC TGAACATGAN CTCCNNTNGA 
    CAAANCNTNC CNCTGNNGAT NTGTNTCNNN NNATAANTNT NTNANTGGAA 
    ACCGNTNTNN TTGTNNGCTT AAN

AT1G79840.1

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR