1. Home
  2. Mutant Lines
  3. 11-6070-1

11-6070-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1679028 [Map]; Strand: w
      • AT1G05615.1 - [+] show detail - Domain of unknown function (DUF313)
        Distance: -758; Region: promoter
      • AT1G05620.1 - [+] show detail - uridine-ribohydrolase 2
        Distance: -130; Region: promoter
      • AT1G05620.2 - [+] show detail - uridine-ribohydrolase 2
        Distance: -552; Region: promoter
    Flanking Genome Sequence: 11-6070-1 - 5-prime edge 
    ATCTCTAATG TAGTAGATCC GTCGAGAGTA AGAACTCTGA CTAGAAAAAT 
    ATGGAAAGAG TTAATGGAAA ACGTGACTGA ATAAAATTCG ATTTGTTTAT 
    ACAATAAAGA AACAGACAAA CAGAGGATAA CAAACCCACN GTTTGTAGAC 
    TTGGAAAAGA GACACCTTTT ATTTTTTTTA TGAACTCTTT GGTGCTAGAT 
    CATAATTGTA TTCCAAAAGT TTTTTCTGTT GTGTGTAAAA AGCCCGGATT 
    TAGAGAGAGA TTTAGTTTTT TTTTTTTTNC NGGCCNNGGG GCCCNNAAAN 
    GNNCCCCCNT TTNCCCGGNN NAAATTNCNG GGGNAANGGG NACCCCCAAA 
    AAAATTTTNN NCNNCCCNGN CCCGGGAANG GGANNNNCCT TNNCCCCTTT 
    NNTNGGGNTC CANTNGGGAN ANCNNCCCGG GNNNGGNANC CCCCGGGGNC 
    CCTTTAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1678935 [Map]; Strand: w
      • AT1G05615.1 - [+] show detail - Domain of unknown function (DUF313)
        Distance: -665; Region: promoter
      • AT1G05620.1 - [+] show detail - uridine-ribohydrolase 2
        Distance: -223; Region: promoter
      • AT1G05620.2 - [+] show detail - uridine-ribohydrolase 2
        Distance: -645; Region: promoter
    Flanking Genome Sequence: 11-6070-1 - 3-prime edge 
    TTAGAGATGA TGATGCTTTG GCAACAGAGA TTTTCTCAAC AAAGTTTCTA 
    CCGGTTCTGT GTGATTTTTT ACCACTTGGT CCATGTCATT TTGGTTTAGA 
    GAAAAATGTA CCAAACCGGA AAAACTTACA CAATACCGGC TCTGTTTTTG 
    TCTCTCAGAG GCATACAGTA TATAAGTCAG ACTCGGTTTC CTTATTTACC 
    TTATGTGAGT GCAACGAATC ATGACCGTTT CTTTTTGTTA CGTGAGCTGT 
    AAGAAATAAG CTACAGAAAT GTAAGAGGAA GAGAGTGTGT GGTTTTAGTT 
    TTAGGTGAGT GGTTTAATTT AATATGGATT ATCCCGTAAG CAAAACAAGA 
    CCTTTGAATA TCTCTTTTAA CCAATTGAAA AACCCTTATA GGCTTATAGC 
    TAAACCTTAA ACCCTAATCT TTTGTTTTGC TAACACTAGA ATTTGTTTTA 
    TTCATTAAAA ACGAAGGAAA ACAATTTTTC TTTTTTAAAA AAAAGTGGAT 
    AATCTCGAAA TTCGCTTCTC TAGCTAATCC CATATAGATT ATAGGAACAG 
    AAGAAAAAAG CT

AT1G05615.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF313)
Computational Description
Domain of unknown function (DUF313) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT2G24670.1); Has 82 Blast hits to 82 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05620.1

Model type
Protein coding
Short Description
uridine-ribohydrolase 2
Computational Description
uridine-ribohydrolase 2 (URH2); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 6369 Blast hits to 6297 proteins in 1349 species: Archae - 75; Bacteria - 4652; Metazoa - 179; Fungi - 246; Plants - 186; Viruses - 0; Other Eukaryotes - 1031 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05620.2

Model type
Protein coding
Short Description
uridine-ribohydrolase 2
Computational Description
uridine-ribohydrolase 2 (URH2); FUNCTIONS IN: hydrolase activity, UDP-glucosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR