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11-6139-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22315788 [Map]; Strand: c
      • AT1G60590.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-6139-1 - 5-prime edge 
    CTTGCAGCTG GAGGGGATGA TTGTAGCTCC TACCGATACT GAATCGTGGG 
    GAGGAGGGTT AATGTGGTGG ATTGAGTTCA CGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22315903 [Map]; Strand: c
      • AT1G60590.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-6139-1 - 3-prime edge 
    GCTGCNAGCA CNAAATATTT CACATCTTAC CNTCCANANN AGCTAATTTT 
    TGTTTTAAAA TCTTGCANAT GTCATAAATT TTCTCACTTG GAATACAATG 
    TTTGCTTGAC AATANGGACC CGAGAATGAA ATCGGGCCAA CGGAGGAAGA 
    TGTAGTCAGG CCGGTATGAT CATCGNTGAC GCCTCGACTT TGCAGGCAGA 
    TGCCCATGCA GCTTCAAACG CCTGCAGAAT TGNTACCACT CGTCATTGTT 
    TGGTTTAAGA CTAANACACA NTTACGGAGG AAAAAAACAG AGAATATGGT 
    CCACTCTTAA ATCGGGTATT TTTGNNGNNA TTNCTNTCTA TNCTCGTTTG 
    TTAGTTTATN GGGGAATTTA ATTAAAACAT TGAGAGGAAA AAAGAAGAAA 
    GTTATGACTT TACAGAACAG AGAGAAAACT TTTTTTATGC TCTGNTTCTT 
    GTTCGGTCTN NTGTTACCTT CTCAACTGTN ANTCACATTA TGGTTATTTT 
    GNAGAAACAA TNNTTAATGA AANCGAGATG AAAATNCTTG NTTAGNCGAG 
    AACAACTANA TNGAATNGTN GTANCGGNTN NTGNAATCTT TTNGNGTNTT 
    GNNCNTGAGN GGNNTTCNNT NCANTCNATC ACCCNNAGCN TCCAAGAATC 
    AGNCACCTNN GNNTTTGTGG AAAGGTCCNN AACTGNGTGG NGACNAGAAN 
    NAAGANTTGG TNGNGGTTGN ACN

AT1G60590.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G10640.1); Has 4525 Blast hits to 4468 proteins in 546 species: Archae - 6; Bacteria - 1298; Metazoa - 151; Fungi - 1295; Plants - 1596; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR