1. Home
  2. Mutant Lines
  3. 11-6265-1

11-6265-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 153220 [Map]; Strand: w
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-6265-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTNCATCCCG CGTTGNNAGC GAAANCATTC TTGNNCGTAC 
    TTCTANAGNA ANGCGTAAAN TGAACTTATA TANTTANGCA AGATGTTNTT 
    TTCNNATGTG AGGGTAGTCN AATGAGCTTA TNGATCAGGG ACATCCNCTN 
    ANCATGANNN NTACTCTGGT AGANCTNCCA CGGGCGATNC CAGTCGTACT 
    CANTCATTGC GAGTAGTGTG TGCAATTGTA ATTCTCATAA CAAGAGATGA 
    CTTTGCTGTG GTTTTTACGG AGAGTGAAGA GATGAGAAAG GCGGTAGCNT 
    GATCTTGCGT ACCTGCTCGG TATAACGATG ATTCTCAACA GTTTACAACC 
    AGTTATATCA GGAGTTGCAG TAGGAGGAGG ATGGCAAGCA CCGGTGGCTT 
    ATATAAACTT GTTTTGTTAC TACGCTTTTG GATTACCTCT AGGGTTTTTG 
    TTAGGTTATA AAACAAGCCT TGGCGTACAG GTAAAGCCAC ATAGCCTCCG 
    GTCTAATTAT TTTGGTTTAA GTTGATGAAA TTGCTTTATG TGGTTTTTCA 
    GGGGATATGG ATTGGTATGA TATGTGGGAC TAGTCTTCAN ACTCTCATAC 
    TTTTGNACAT GATCTACATA ACCAATTGGA ACAAAGAGGT ACCCCCNCTC 
    ATTNNAGGTT TTATAATNAA ATCTTTCACA CAAATNGAAG NAAAANGANN 
    CACTATCTNA ATTTATTANG NGGAACANCT NCANNCCNGG CCGNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 153198 [Map]; Strand: w
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-6265-1 - 3-prime edge 
    CTTATAGCTG CATTGATTCC TATGAACAAC ATTCCTTCCC ATCCATTAAT 
    GTTCATACTG AGAGAAACAA AAGTGTTATC AGTTATCAGA AAAAGAATGT 
    AAATCTTTGA GTTTGTGAAG GGTTTTAACA GGTTAACCAG ATTGAGAGAG 
    ATCCAACGGC TATGACAGGG TCTTCAAGAT GTCCAGTTAA GACAATGATC 
    GTCATGAAGT ACCAAATCTC TAGACAAAGC ATAACCGCAG ACGCAAACGA 
    CAGTTTCAAA AACGGCCAAA CGTCTTGAAA CGCTAACCAA GACAGCCCTT 
    TCCAACCGTC TTTACACCAC CCTACAACAT AAACAACCTG CGCGATCGCG 
    ATTCCCCAAG CCGAGACATC AAACGCAGCC GCTGCACCGT TTAGCCCCCA 
    CTTGAAAACG TTTATAAAGA GGTAGAGGAT GAAAATGTGA AGGGTCAAAG 
    CGAAGAAACC AATCCATGCC ATGATCCCTA CTTTGCTCTG TGACTGGAGA 
    AACTTCTGAG TCGGGAAGTT GATAGCCAGC GCAAACATTT GAGGGATGAT 
    TTGTGTAGTG AATTTGCCAG AGATCTCTGC GATTTCGGGT TCTTGGCCGA 
    GTAAAATGAG AAGTGGAGTT GCGTNGATGT AGAGAGGAAG CAAGCAGACG 
    GAAGTTCCGA GGAGGATNAG CCAAGAACGC TGCATTATAA ACACCTAACA 
    TATTCNTTTG TCCCGCTCCA ACGCTTG

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR