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11-6272-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24682254 [Map]; Strand: c
      • AT1G66230.1 - [+] show detail - myb domain protein 20
        Distance: 3839; Region: intergenic
      • AT1G66235.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 752; Region: intergenic
    Flanking Genome Sequence: 11-6272-1 - 5-prime edge 
    ATAGTAGATA GAGTTAATTA CAACGTATGA CCTTTATTTA TGGGATATTT 
    GTAAAAAAAA TTCCTTTTTC TAATTTTTGT TGTTGTTTTT GTCCTTTTCT 
    AATATCGTTT TTTTTGGTGA AACAAAGTAC TACGATTAAT AATTTGGGTT 
    TAATACAAAG AGACATAGTT TTTTGCCAGC ATATTGGCGA TTTAGGTTGC 
    AACCTGATAA AATTAGAGGT TTTTCTATCC TAAAAGACGA TTTAACACAT 
    TATACTTGAG TTTATAANAT TCAAGTTTTT TGTAGGGTAT AATTTTCGTT 
    ATGAAGTATA TGTTTCACAA AAAAAAAANC NCCAAANGTT NCGTTTNCNN 
    AANGGGAAAA GGGNAAANTN GAAAAAANGN NGNAAAAANA CCAAAACCNA 
    AAANGGGTTT NGCAAAANGG NCNTTTNGGG NAANNTNCCC TCAAAAAAAA 
    AAAANAANNA TTNTNANGGG GGGTTGGANA GGGGTNCCTA NTTNCCTTTT 
    ANCGGACAAA CCNATTTTTT NNNANTTGGA AAATGGNCNA TNNTANTANT 
    NCCNTGGAAA NCNAAAANCA GGGGGANGNN ATTTNTNNGT NTNCCCAAAG 
    GGTNTTGGNA ANTTTTNNNA ACTTTTTAAA AAAANGNAAN NGNNGNGANN 
    AANANTTTNN NANCCNGGGG GGGGACNNCC GGNNCNCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24682375 [Map]; Strand: c
      • AT1G66230.1 - [+] show detail - myb domain protein 20
        Distance: 3960; Region: intergenic
      • AT1G66235.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 631; Region: intergenic
    Flanking Genome Sequence: 11-6272-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTGCATTG 
    CCATTCCTGA CCATTATAGT ATTATACTTT AGAAGCT

AT1G66230.1

Model type
Protein coding
Short Description
myb domain protein 20
Curator Summary
Encodes a putative transcription factor (MYB20).
Computational Description
myb domain protein 20 (MYB20); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 43 (TAIR:AT5G16600.1); Has 8410 Blast hits to 7811 proteins in 453 species: Archae - 0; Bacteria - 0; Metazoa - 663; Fungi - 296; Plants - 5767; Viruses - 4; Other Eukaryotes - 1680 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66235.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24380.1); Has 283 Blast hits to 282 proteins in 34 species: Archae - 0; Bacteria - 19; Metazoa - 15; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR