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11-6290-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12550001 [Map]; Strand: w
      • AT4G24175.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family U...
        Distance: 1041; Region: intergenic
      • AT4G24180.1 - [+] show detail - THAUMATIN-LIKE PROTEIN 1
        Distance: 355; Region: intergenic
    Flanking Genome Sequence: 11-6290-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATGGAGAGAT GGCGGTGGAT CAGTACAAAC CTCACCGTCA CCATTATCGA 
    CGTGGTTGTC CGATGTCTTC ACCTCTGATT CCTCAAATGT TCAGTCTTCC 
    CAATATTTAC TCATCTTTAC TATTTTTCTT CTTCTGCATT TTTGATATTT 
    TTGTTTCTCA TTTCCGGGTG TATATTTTCT ATCCTATAAC ATTTTTATGT 
    TTCATGATTA TGATTATGCA CATTGATGAA CATTTAATTT AACCAAATTT 
    ATTTGGGGGT TGATTTAAAT TTTGGCGGAA AATAGCCTAA AGTCCATGCA 
    AAACCGTATC CAAATGCAAA GTATATGAGA TGCCACTGAC TTTAGGGTAG 
    AAGTACGATA AGTGTTATAG TCGCAAATTA GTAAGCAACA TAATAAAATA 
    CTACCAAGTG AAAAGGACTC GTGTATTTAT AGATATATAG TATTAGTTTT 
    TGTTTTGCTT TGATGATGGA TGATGTGTCC GATAAGAATT ACATTGATGG 
    AGAGATGACG AGAAATGCAA AAACTTGGAG TGTAAAAGAA AGGGAACCAA 
    AAATAAAAAT AGAGGACTAT AAGATAACAG AAACAAAGGT GGAAAGAAGT 
    ACAAGATATT ATCTAGAATA AAAAAGATAC AAGGCAAACA AACATCTATA 
    TGGAGACTTT CTTAAAGAAT GAGGTAAGAC TAAAGGAAGT ANACGGAGTG 
    TATATGANAT CTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12550001 [Map]; Strand: w
      • AT4G24175.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family U...
        Distance: 1041; Region: intergenic
      • AT4G24180.1 - [+] show detail - THAUMATIN-LIKE PROTEIN 1
        Distance: 355; Region: intergenic
    Flanking Genome Sequence: 11-6290-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CCACCCATTC GCTGCCGATT TTTGGCTGTA 
    ACATATTCCA ACTTTAATCA GATTATCAGA ATAATAGTAT ATAGGACTAT 
    ATCTTTGTTT TTTTATAAAA TATAGGACTA AATTTTAATA ATTTATCTGT 
    GCTTCCCCGT TTCATAATGG TAGGCCTATG GTACGTGTTG TAATAACCTT 
    TTTGTTTTCC TTTTCTTTGA TGGAATGACT ATTATAAACT CCTTTATTAC 
    GTGTAAAAAA AAAAAANGNN TNACCCTTTT TTTTTNACCN GGGNNAANCC 
    NAANNCCCTN ATTTNGNNAN CAAACCCNGN GGGGGNCTTT NCCNAAAANN 
    CNGGGGGGAN CAATTAAANG GAAACCAAAA NTAAAANAGG NTNCCCCCCC 
    NGGGCNGGGN GGGGCAAAAN GGGGGGGGGN AANCNNCNNN NGGGCNNGGA 
    AACGNCNTNG GANNNTCGNA AANCNCGTNT TTTTTNNATT NGGGNCCCCC 
    AANTTNAANN TTCCCCNAGN NCCTGNNGGG TTANNCCCGG GGGGGGGGGG 
    NGGCCCCCCC CCTNCAAAAT TTTTGNGGAC TACAAAAANG CCTNAACCCC 
    CCTTTGGNNG GGGNNCCCGG ACCCAAACGG GGGCNCNGGN GGGAANTTTT 
    GGGGTAAAAC CCNNNNCCNC NCCCGGGGNA AAAAAAGNNC CTTTGNNCCC 
    CCNNTNGNTT NNANNANNGN GG

AT4G24175.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24180.1

Model type
Protein coding
Short Description
THAUMATIN-LIKE PROTEIN 1
Curator Summary
Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance.
Computational Description
THAUMATIN-LIKE PROTEIN 1 (TLP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to other organism, induced systemic resistance, response to bacterium; LOCATED IN: endomembrane system; EXPRESSED IN: root vascular system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G38660.1); Has 1607 Blast hits to 1581 proteins in 180 species: Archae - 0; Bacteria - 47; Metazoa - 54; Fungi - 78; Plants - 1413; Viruses - 3; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR