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Mutant Lines
11-6316-1

11-6316-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 12264821 [Map]; Strand: w
- AT4G23500.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

CNNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCAA CAATCATGTA GAGCTTACTC ANCCNNNTTG 
GACNANTNCG GNNCCGNANG AGACGGTGTG ACTTCAAATA CAGCGGCGTT 
TCGCGACGCG GTGTCACAAC TTAGCCGTTT CGCAGACTAC GGTGGCTCAT 
TGTTATTTGT TCCCGCCGGA CGGTGGCTCA CCGGAAACTT TAACCTGACC 
AGCCATTTTA CGCTTTTCCT CCACCGTGAT GCTGTTATCC TCGCCTCTCA 
AGTAAGTTTT TTTTCTCCAT TATAATTTAT CTTTCATTTA CAAGAACTCA 
AAAAAAGGAA AATTAGTAAC ACCCGTGACA CAAAACTCCA CAAACGTCTT 
TGATGAATTT TTTTTTTNTG TNGCAAATCN TAACATACNT AACGNGACNT 
TNGTNGGCCA ACTTNTGATN ATNTNTNGGT NGGGCCATTC AATTTATGTT 
TNTNTTCGGN AAANAATTNG TTTNTAATNT AAAGTANCCC ANCTTAAAAT 
TGCNANATTT AAAAAATNTA ANAATTTGGG GTTNTACTTA AAAGCTAAAT 
TTTTTATTAN CATGCGTTAC TTTAAANTTN AAGGAGGGGG NTCCCCAAAA 
ACAAAAANTN GGGAAAGTTN NNGGGGAACT TGGGATCNAN TTACNANCCC 
GGGCCGGNNA ANCANCNNGN CCNNAAAA

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 12264819 [Map]; Strand: w
  - AT4G23500.1 - [+] show detail - Pectin lyase-like superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 11-6316-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAT 
ATGGCTGAGT ACTCAAACTC TTCTCCGCGA TGGTGGTTAC GGTGGCGACG 
ATGGCGATGA TT
```

AT4G23500.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G61490.3); Has 4172 Blast hits to 4159 proteins in 509 species: Archae - 6; Bacteria - 1479; Metazoa - 14; Fungi - 1128; Plants - 1399; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Link: InterPro Scan - TAIR