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11-6369-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18021173 [Map]; Strand: w
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-6369-1 - 5-prime edge
    ATGCATCATG ACATGAAGGC GCCGTTATCG CATTACTTTG TGTACACGGG 
    ACATAACTCT TACTTGACTG GGAACCAAGT GAACAGCAGA AGCAGCGTAG
    AACCGATCGT GCAGGCTCTC AGAAAAGGCG TAAAAGTGAT CGAGCTCGAC
    TTATGGCCTA ATCCTTCAGG GAACGCTGCT GAAGTTCGTC ATGGCAGGTT
    GGTCCCACTA ACGAAGTCTT ATAATCAACA AACAGACTCC AAAAAATGTC
    ACACACTATA TGTGTTTTGG TTCTCTCATC AGGACGCTTA CTTCGCATGA
    AGATTTGCAG AAATGTCTAA CCGCCATTAA GGATAACGCG TTTCATGTGT
    CTGACTATCC AGTCATCATC ACTCTCGAAG ATCATTTGCC ACCCAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18021050 [Map]; Strand: w
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-6369-1 - 3-prime edge
    CCTTAACCCA ACCAAGAACA TATAATATAC CCAATTACAA AACCATTTGT 
    GAAATAAATC CATAAAAAGT TTCCAAACTT AGATACCTGG CCAGACATGG
    GAAGAGGAGA GTTGGTATCG CTGAAGAGGT AGCGATAGAA GGCGTTGAGA
    TGAACAAGTC CATGGTGATG AAAAACGTTG TGGTGTTTAA CGCTGTGGAA
    GATATCTTGC ACGTAGTCCA ACCCTGCGTG CCGTTCTCCT TGGACTTCAC
    CCACAAATCT TAGAAGCTCA TCGAAAGACA TCTTGCCGTT TCTTGAGTAA
    GCT

AT4G38530.1

Model type
Protein coding
Short Description
phospholipase C1
Curator Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational Description
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR