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Mutant Lines
11-6395-1

11-6395-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 20722675 [Map]; Strand: c
- AT1G55500.2 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: 0; Region: exon9 (3UTR)
- AT1G55500.3 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: 0; Region: exon9 (3UTR)
- AT1G55500.1 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: 0; Region: exon8 (3UTR)
- AT1G55510.1 - [+] show detail - branched-chain alpha-keto acid decarboxylase E1 beta subunit
  Distance: -627; Region: promoter

GTATTAACAA AAACATAACA TTTTAATTGG ATGTGTTATC CTTGTCCAAT 
CAGCCTTTTA GGTTTTGAAA CCTTGGAAAC AGAGGAGAAA TGGAGAAGGA 
AAGAAGATAC TAAATTTTCA GATTGAAAGC AAAATCTAGA AGAAATTAAG 
AAAAGACTCA ACAGAGTCAT GTCCGAACCA GAAACCAAAG AAAAATGAAA 
ATCTGTCTAA GCTAAAACGA AAACAAACCC AACCCTGATT TTATCTTTCA 
CTACTTCTTC ATCTTCCCAC CGTATGCAGG GATCTTTATA CGCATTTTAC 
ATGGTAGAAT CAACAGTTCC TGGTTTCTCA TCATTGGTTT TTCCTTCCCA 
GACCTGTTAA AGATATATGG GTGCATTTCA ATACTAGAGA GTAGAGAGGA 
CAAATGTAAA TGCATCTGCT TATATCTATG GAATTAACCG TTTTCTTCTC 
TTGCCTGCTT CTGGGATTGT TGCTGCTTAG CTTTCTTCTC CAAAATAGTC 
TTTTGTCGAG CCTCGTAGAA CGAGAAATCA TCCAAAATGC ATGTCTTGCT 
GTTATGCTCC TTGAAAATCT TTACAACCTT CAAACCCTGC TCCAACTTAA 
CCTACATACA TGATCACATG GAAAGAGTTT GAACATTGAA AAGTGGAAAA 
TATTGCTGGT AGATCAGAAA CATATAG

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20722791 [Map]; Strand: c
  - AT1G55510.1 - [+] show detail - branched-chain alpha-keto acid decarboxylase E1 beta subunit
    Distance: -511; Region: promoter
Flanking Genome Sequence: 11-6395-1 - 3-prime edge
```
GTTAATACTC TATAAACCTT TGTAGTTAGA CCATTAATTT TGTGTGAAAC 
TCGTATAAAA TGAGTTAGTT GCAACTTGCA AGAGAAAGAT ATCGATTCGT 
GTCGGATC
```

AT1G55500.1

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1490 Blast hits to 1324 proteins in 197 species: Archae - 2; Bacteria - 19; Metazoa - 721; Fungi - 248; Plants - 363; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55500.2

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link: InterPro Scan - TAIR

AT1G55500.3

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link: InterPro Scan - TAIR

AT1G55510.1

Model type: Protein coding
Short Description: branched-chain alpha-keto acid decarboxylase E1 beta subunit
Curator Summary: branched-chain alpha-keto acid decarboxylase E1 beta
Computational Description: branched-chain alpha-keto acid decarboxylase E1 beta subunit (BCDH BETA1); FUNCTIONS IN: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Transketolase family protein (TAIR:AT3G13450.1); Has 16577 Blast hits to 16568 proteins in 2706 species: Archae - 211; Bacteria - 10745; Metazoa - 523; Fungi - 224; Plants - 389; Viruses - 0; Other Eukaryotes - 4485 (source: NCBI BLink).
Link: InterPro Scan - TAIR