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11-6518-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5525979 [Map]; Strand: c
      • AT3G16290.1 - [+] show detail - AAA-type ATPase family protein
        Distance: -984; Region: promoter
      • AT3G16300.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6518-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACAGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TCTCTATGGC TTCGAGTTTC AGCTCCACGC 
    CGTTTGGTCT CTCTCAGATT CTCTTATGTA AGCATATTTC ATAAATTTGA 
    CATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5525981 [Map]; Strand: c
      • AT3G16290.1 - [+] show detail - AAA-type ATPase family protein
        Distance: -986; Region: promoter
      • AT3G16300.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6518-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGA 
    GAGTGGTCAT GCTAGTCTCG CGTGCTGTTA CCATTAACGT AACAGCCACC 
    GTTGATACGG CCATGCACAT GGCTCTTAGC ACAAACATGG CCACGTCATT 
    GCAGTCTCCC GCCGCCGTGA CGGTTATCTT CGCCGTAAGT GATGGCTGTG 
    TTGACCACNG TCGCGGATAT CAAGCT

AT3G16290.1

Model type
Protein coding
Short Description
AAA-type ATPase family protein
Computational Description
embryo defective 2083 (EMB2083); FUNCTIONS IN: in 8 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 40436 Blast hits to 36159 proteins in 3226 species: Archae - 1511; Bacteria - 13353; Metazoa - 6817; Fungi - 4228; Plants - 3474; Viruses - 31; Other Eukaryotes - 11022 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16300.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G79780.1); Has 429 Blast hits to 429 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR