1. Home
  2. Mutant Lines
  3. 11-6558-1

11-6558-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1691103 [Map]; Strand: w
      • AT1G05650.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-6558-1 - 5-prime edge 
    CCCCTGACCG ATAGCAACAC AATCGTCTCC GGTCTGAACG GTGCTTCCGG 
    TTAATGTGAC TCCAGTGGAG AACTGAACGG TAAAGCCGTC AGTGTTTGGG 
    CTGTCTCCGG GAGCCACCAG CCTAATGTTA CNGGACGGCC ACATTGGTGC 
    AACCGTTGAT GGTCATATGG CTAACCTGGC TGTTCATCGA TTTCACTCCA 
    CTTATGATCA CGTCTTTTGC GGAGTTGAAC GATATTGACT ACAGTAATTA 
    ATATATAAAC GCCATAGATT AATAAATAAG ATTATAAATA TTTCATTTTA 
    TTTTGACCAA AGAATCCATT TCCTTGTCCA AAAATCATTA TCATAATAGT 
    TATTATATGC TTATAAAATA AATTCCTAAA AATGGCATGG ATAGATCATA 
    TTGAAAATTA AATGTGCCTG AATTAATATA GTTTAAAACT ATCAACTAAT 
    TCCTTTTTTT TTTAATCGNA AGTAAATGAT NGGAATAAAA ATATGTTACT 
    TGACTNTTAA AAAAAAAANT TNGNCTTNTT TAGTTTTTNC TAANCAANAA 
    GGGATNAANG CTTTTTNGNG GCCCTTTNGC NTTCGGGGGG CCCTTATTTN 
    TNANNGGAAA ATGGGGGGTT TTTTTTTNAA ATACCNTTGN NTNGGGGGAA 
    AANCTTTTGN NCCNTAANCC CGGGGGGAAA ATTTTGGCNA A

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1690987 [Map]; Strand: w
      • AT1G05650.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-6558-1 - 3-prime edge 
    GTCAGGGGAC CCGCAACTTC CTCATCACCA AACTTGCTTG TGGCCCAGGT 
    CACGGGGTTA GGTATATACC ACCGTCTAAT TCCTTAGAGT AAATTATGTA 
    AATATATCAT TAATTGTGAG GATCGGAATC ATGAGTTTCC AACAAAAAAA 
    AANCTACCAN TNTTGCCTTC NCTCNCTNTG GTCNCAACTT ATNTNATNAT 
    GNNATNACNG GCANCNTCGG GAGTTNGGCA AANCANTTAA NCAAAAACGG 
    AGTAAAAANC GNGACAGTNT CNANTTCGGT NTTCNCCGGA TCACAAAACG 
    GCGNGAGGAT AAAGNCNTGG NCAAGGCCNA NTCCCGGATT CNTTAAAANC 
    GTNTTNTTCC AAAATNTANT CNTNAGGAAC GTCCAAANCC CTNTCNTANT 
    CNACCAAAAC TNTNGNCCGN CCAAACAAGG TNGCCCTACT GAGGTNTNTC 
    CATNTNATAT TTTNGATCAA TTTAAAACTA ATCAAATNTN CTNTNTTANC 
    TTAGNCAAAT AATTAAANAT TAATNANCTT TNANGTANGG GTAACCATNC 
    GGGGGNGAAA ATAANCCAAG NGACNTACAA AAACATACAA GGAACTTCGG 
    CNACCCAGGA ANCANTGAAC CTGGTGTGTA CCAAGANCAN TCCNTGCCCG 
    GGAATCACNT TNCAAAACAT AAAGCTACCA NCCCGGGCCG NNACCCCCNG 
    NCCNT

AT1G05650.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05660.1); Has 4025 Blast hits to 4009 proteins in 482 species: Archae - 4; Bacteria - 1133; Metazoa - 14; Fungi - 1282; Plants - 1474; Viruses - 2; Other Eukaryotes - 116 (source: NCBI BLink).
Link
InterPro Scan - TAIR