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11-6566-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1407568 [Map]; Strand: w
      • AT2G04160.1 - [+] show detail - Subtilisin-like serine endopeptidase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-6566-1 - 5-prime edge 
    CGAAGTACAC CACATATGAA GACGACTGAA ATCACACAAA GAGAAATGGT 
    TAATAAAGAA TGTGAAATGA AAAAAAAGAT TGTTATACTG TAAATGGGTA 
    ATGAAATGAA TGTACATCTT TAGAAGCAAG AATGTGTTTC GAGCTCATGT 
    GAACAAGAAG AAGAAGAAGA AGAAGAAACG AGAAGTTATG TGTTAGCTTC 
    ATTCTTCTCC TTCTTCTCTC TTTTTCTTTG TATCTTTGTT GGACTTTCAC 
    TTTTTACTTG TGGCTTGTGC GTTGCTCCTT TATAATGGGA TTGCAAAAAA 
    AAGAAAGAAT CGGTTTTTAT TTCCTTTGTT ATTGGTTNAN AAAACTATTT 
    TGGTTGTACC GNGTGCNATC TTTTATGTTA ATAAAATATT GAAATTACAA 
    TATCTTTTGG GGTANACTCG TTTGAGTTTA TATTAATATC GATNGACAAA 
    AAAAAATTTT TTTNGAAATN TTTTCAAAAA CATNAAATCT TGATTTNGAT 
    ATAAGTTTTT TTTTTTTTTT TNGGAAANCC NTTTTAANCC NGGGGGGNAN 
    NNCNTTTNNA AAAANNNNNA AAAAGGGGGT TTTTTNGGGN NAGNNNAAAA 
    AAANANNNNN TTTTCCCCNC AAAAATNAAN GGGNTTTTAA AAAAAAGGGG 
    NNNCNNANAN NTNGNGGGGN NAAAAAAGGG AAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1407452 [Map]; Strand: w
      • AT2G04160.1 - [+] show detail - Subtilisin-like serine endopeptidase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-6566-1 - 3-prime edge 
    GTACTTCGGA GCTCACTCTC ATGTCGGAGA GATAACAGAA GATGCCATGG 
    ATCGAGTCAA AGAAACTCAC TACGACTTTC TTGGTTCCTT CACTGGAAGG 
    TTCTCTTAAA CAAAACAACT CATTAAAAAC TTATTTAATA TGTGAAACCA 
    TTTTCACTGA CTTAAGTCTT GATAATGTGA AACCAGCCGT GAGAGAGCCA 
    CAGACGCCAT TTTCTACTCA TACACAAAGC ACATCAACGG ATTCGCTGCT 
    CATCTAGACC ACGACCTTGC TTATGAAATC TCCAGTAAGT ATACAAACGT 
    AACCATTTTA TCTTCTTCTC TCTTTGTGCT TCACAAGATT TGACTCTTTT 
    CTCTTTTCTT GATTATTCCT CAAGAACACC CTGAAGTTGT GTCTGTCTTC 
    CCAAACAAAG CT

AT2G04160.1

Model type
Protein coding
Short Description
Subtilisin-like serine endopeptidase family protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
Computational Description
AUXIN-INDUCED IN ROOT CULTURES 3 (AIR3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, response to auxin stimulus, lateral root morphogenesis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G59810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR