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11-6577-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4874781 [Map]; Strand: c
      • AT3G14517.1 - [+] show detail - transposable element gene
        Distance: -2642; Region: intergenic
      • AT3G14520.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 967; Region: intergenic
    Flanking Genome Sequence: 11-6577-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATAATG ATATTTTTCA TTTGAATATA ATTTAACATT 
    ACATTAAAAA AAAAANACTA TNCCGGCTTT GNGATTTTGG TTATATGAAT 
    ATTTAAAATA TCTGGGGANA TTTANACGGA TTTAAAATGA TTNGANATAA 
    TTTTGCANAA TTACTATTAN AAATCTTAGT ATGNGATTAG TATAAATTTC 
    AGGACATTNG ATCATAACAT TTTTATNTNT GATCGATCCA TTAATAATAG 
    TCTAATAACT TCAACAAATN CTNTNTCCAA TAAGGCATGA TTTCAATNCA 
    TTTCAAAAAA CAAAATCNTC CCAAAATCAT TAACTCAATT CNAATTTGAA 
    TTTTGANGGC GTCATGGGGT TCTCNACATC GGGTTNGTAT ATTAACTTCC 
    GGATCTTGCN TTATAATTTA GTTGAAAATT AGGACTTAGG AGGGAACNCA 
    TTTTTCNAAA ATNCNAACGN GATAAAGTNT CCCACTTTTC CCGGATTTTC 
    TNGNNTACAT AAATTNCCTT AANATTATTA CTTTTNACTT TTTACACAAA 
    AANGTTNANC TTCCTTGGTT AACTTANCGG GAATAAAANC ACCNNCCGGC 
    ANATATGAAG TAGCTTTTTG AAANAAAANC CTAACCTAAA TANCAGANTN 
    CTNCANGTAA AACANAATAA GCTNTNTCTC TTTCCCTCTG GACGACNTGG 
    NA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4874839 [Map]; Strand: c
      • AT3G14517.1 - [+] show detail - transposable element gene
        Distance: -2700; Region: intergenic
      • AT3G14520.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 909; Region: intergenic
    Flanking Genome Sequence: 11-6577-1 - 3-prime edge 
    AGGTCAACAA GTGCAGCTTT GGATTGAAAA CAGCTGAAAA TCTACAAATC 
    AAGAGAGGTT AATTGTTGGA TTCAAACCAC AGTTGTAGTC CCTTATCATA 
    TCGTCGATCG CCCATCTGTC TTTAGTGATG ATTTGGACAC ATACTTTCGA 
    TCTCTGCAGC TTTACATATA TAATACATAT AATCCAGTGA TGCTTTGTGA 
    TCACGTTTGT ATTACTCCAA GAAAGGTGAT GCTTTGTGAT TATCTGCTTT 
    GCGCTAAAAG TGGATC

AT3G14517.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G14520.1

Model type
Protein coding
Short Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Computational Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14540.1); Has 1704 Blast hits to 1673 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1700; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR