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11-6610-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1361790 [Map]; Strand: c
      • AT1G04830.2 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G04830.1 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6610-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    AGGAGGAGTA GACCACATGG TGCTATTAAG CCATTCCGGT ACCTTTTTCC 
    TCACCATCTC TAGGGTTTGA TGGATCGATC AAGCGATTGA AACTCACGCA 
    GATTCAATTT CCGAGGTTTC CACAAGATTT AATGAGAGAA AGGTTCTGCG 
    AGTCGGTGAT TAATGGAAGT TCGTGATTTT GCTTCTTCTC ACAGAGAGAG 
    AAAGAGAGAG AAGAATCGAA GAAATTAATA TTAAATATAG CCTCAATATT 
    GTCGACTATT TACACATTTA TCCCTTTCTT TTTCTTTATT CAATTTTCCC 
    CTGTTTGTTT TGTTTGGAAA TACTTAAATC CATAGTCATT TGTAAGATTT 
    TTTTTATGAT TAGGGATATA TTTGGAAACT ACAATAAATA TATGGATTAT 
    GTACATTAGT ATTATCATAT ATCTAAAGAG TTGAGGTAAT TTTTGGATAT 
    CAACAAAATA ATTTGAGTTA AATGGTATAA CAGAAAGCAA CAATAACTAT 
    GATTTATTTT ATCGTATTAC CATATATATA AAGTGATATA CAAACACAAG 
    ATTGATTAAT CAGCAACAGT GATGGACCCA ATTTACCTTG GCGACTGGTA 
    TTTGTTCTCA TGTGATACCT GTGCTTCGCA AACAATTGCC ATGTGTTTCG 
    TNGTTGNCTT CAATAATACA CATGACACCT ACAGATACTA ACATCTCCTT 
    GC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1830428 [Map]; Strand: w
      • AT1G06040.1 - [+] show detail - B-box zinc finger family protein
        Distance: -538; Region: promoter
      • AT1G06040.2 - [+] show detail - B-box zinc finger family protein
        Distance: -538; Region: promoter
    Flanking Genome Sequence: 11-6610-1 - 5-prime edge 
    CTTGGAATGA CGACATGTTA TGTTAATATG TACCATTCGA TCAGATTTTT 
    CTTCTTCTTT CACTTTTTCG TTTTCTCAAT CATAAAAACG ATTAATGCAA 
    TCATTAAAAA TATACTTGGC ATGTTAACTA ACAAAGAAAT GAATGCTTAG 
    CCGGGTTAGC CCGTTCGAGA AAAAGAATGA TCCTAAAAGA CACCAATACA 
    AAATTAGGCA TGGTTGGTCA CAAGAATTGT TGTTGGATAT CACATATCCA 
    TCCATATTAG TAAAAACCAA TCTATACATC TGTGGTTTTT TTAAAGAATT 
    GACAAGTTTT TGTTTCTGTT TTTTGGTAAT GAAATCGAAC AAATTCAAAG 
    AATTGTGAAG TTAATAACTC CCAAAACACT TACTGCTTCT GTACATGTTC 
    ATCCTTCTGG ATGTCCCCAT GAGAAGTATT GTTCATGTTG GCCGTATCTT 
    GATTAAGCAG ATTAGAGAAT CCATTTCCAA TCGATTTCCA CCAGCTCGAC 
    CGCTCTGAGG TAGTTTGATC CCACTGGTCA TTACTGGTGC TTGAGGACAG 
    TTCGATAGAT GTGGCTGACT CGGTCTGCAG CTCANAAAAT CTCACAGCTC 
    CTANTAGCTT TTNTGGAAGC TCTGCTTCGG TCTGACTCTC ATGAGGAACG 
    CAAGATCAAC TGTCAATGTA NNAACGTANC

AT1G04830.1

Model type
Protein coding
Short Description
Ypt/Rab-GAP domain of gyp1p superfamily protein
Computational Description
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1); Has 3724 Blast hits to 3613 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 1821; Fungi - 641; Plants - 593; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04830.2

Model type
Protein coding
Short Description
Ypt/Rab-GAP domain of gyp1p superfamily protein
Computational Description
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1).
Link
InterPro Scan - TAIR

AT1G06040.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Curator Summary
Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.
Computational Description
SALT TOLERANCE (STO); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1); Has 1912 Blast hits to 1325 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1809; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06040.2

Model type
Protein coding
Short Description
B-box zinc finger family protein
Curator Summary
Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.
Computational Description
SALT TOLERANCE (STO); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1); Has 1915 Blast hits to 1323 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1814; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR