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11-6629-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1462008 [Map]; Strand: c
      • AT5G04960.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6629-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CGTCGAGTCT GCCGTAGGAG GACATTTTTG 
    TAATTTCCTC CTAACCGGCC TCTCGTTTGT GAGATATTGA AGTTTTGTGT 
    GATCAAATGT TTTTGATGTT ATCTGTTTAC TCGTGTAGAG AGGATATATA 
    AGAGTCGACG ATTTGTATTT TTAATTAAAG TGAATGACTA AACTTGATTT 
    TACGCGGCAC AAATATATAT TTTGCGTGGG AGGCACTAAG ATGAATAATT 
    TGATTGTTAA CATTGCGAGT GCTTCTCATG TTTCTTTGTG TATATGTTAG 
    TATCTTTCTC GTTTTATTTT ATTTTAAGAT CGATCTTCCT GTTTATATGC 
    ATCATTATAA TTAAAGTTAA TAAGATTTGA TTTAATAATA GTAGTCATTA 
    CTCTTTTTAT ATTATTTTCT CACTAAGCCA TTCATTCGAT TGTAGAATT

AT5G04960.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: root hair specific 12 (TAIR:AT3G10710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR