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11-6710-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16615768 [Map]; Strand: w
      • AT5G41540.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6710-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAT CACAATCTGC TCCTGATCTT CTTTGCATTT 
    TAAGATTTCT ACCAATTCAT CTAAACACCA GCTTGAAGAA GGGTAATTCT 
    TAGATAGCAC CACCAGCGAC ACTCTAGATT CTCGTATTGC TTGCACCAGT 
    TCAGGTCCGA TCCTCTGGCC TCGTTCAATC TCTTGGTCTT TAAATGCCAC 
    GATTCCCTTG ATTGCAAAGT GAAAACGTAA ATGACTGAGA AATTTTCTAC 
    GAACGTCTGA GCCGTGGAAG CTCGGGAAGA CATGATATTT CCTAACGTGG 
    GTCGAAGAAG AAGCCATTAG AGATAGGGTA AAGAGAACTT GAAGAATATA 
    TCGGAGCGTT GCATTGACTT TGACAGGAGT TCTAATGCAG TTATCCAAAC 
    ACTAAATAGA TCGAGGAGAA ACTCTCTTAG AGATTTGAAT GCTGATTGGT 
    TGATTTTTTA AGTCTTCGTA TGATGGAACT TCCTCATCGC CGTGGCCTCC 
    ACTACACATA ATAAAAAACC AAAACACATT ATCAGATATT CTTTTGCAAG 
    TCACAATGAA ACAGCGATAC GATATTAAAA AAGATGATAG AGAGAGAGAC 
    AGACTTTTCT CTTCTTCTGT TGTTTCTTAG AAAAGCAATC TATGGGATTC 
    ATGAAACAAT TGTGAGTGCT TGATATTAAT AACACTATAA ATCTTGCAAA 
    TGGGTTTTCT GAAATATA

AT5G41540.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR