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11-6714-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2319715 [Map]; Strand: c
      • AT1G07540.1 - [+] show detail - TRF-like 2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-6714-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CGGTATCTAT TTCTATTGAG GTTTTTTGTT 
    ATTTTTACCA ATCAGATTTT TGTATTAATT CTGTTCATTT TTTCTTGTTG 
    TGCTTAGTGA AACTTGGAAT CAAGTCATTT AGAGTCCCTG AACTTTTCAT 
    TGAAATTCCA GAGACAGCTA CTGTCGGTTC GCTGAAGGTT AGGATTTTTC 
    GGCTTATAAT TTTCTGGAAA GGATCTCCTT CATGTTTATG GATAATGATT 
    GATGAAACTT TACTTCTTCT CGCTAGAGGA CAGTGTTGGA AGCTGTGACC 
    TCGATACTTG GAGGTGGATT ACGCATAGGT GTTCTGGTTC ATGGGAAAAA 
    GGTTAGAGAC GACAGTAAAA TGCTTCTACA GACTGGACTC TCTCTAGACA 
    CTCTTTCANA CACTTTAGGG TTTTGTCTTG AGCCAAATCC TCCACAATCC 
    ACAAAACCAC TATCTCCTGA AGATTCTGAC TTTGCACGTC CCTGTAATGT 
    ACCTCACACT CTAACAAGGT CAGTCTCTAT CCANAGGTCA ATGTATGCTG 
    CTTCTTTCTT TAGTGTANAG AAAAACTCTG TTTCTGATGT TTTCCAAAAC 
    TTTTTTGACA TCATTAGGNG TCTCCCATCA CCAGGGAAGC ATGCTNAACC 
    NANTAACTCT GTANAAAGNG ACCTTGACTN CNAANCCTNT GNNCNANNNN 
    NGGGGNAAAC CATNTNCNNN ANAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2319721 [Map]; Strand: c
      • AT1G07540.1 - [+] show detail - TRF-like 2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-6714-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TTTAGAATCT CTTGGTGATT GGAATGCTGC AGGCTGCTTC TGACAAGCTA 
    TGGATGATAG AAAAGCTGAA GCTGCCAAAA ACAAAGTTCA AAGTTAATCA 
    CTATATCATC GTAAAGTGAT TTTTGACAGT TAAATGACTA GCTTCCGATA 
    ATATACCCTT TCGAGGTGAA CCAGACTGGC CTTCATTTTT ATTTGTTTCC 
    TCGGATTGTG ATGCTGTATA ACCATCAAAG TATCTCCTTT TCTTTATTGG 
    ATAGTTCCTC TCTGATCTTA AGCT

AT1G07540.1

Model type
Protein coding
Short Description
TRF-like 2
Curator Summary
Arabidopsis thaliana telomere-binding protein, putative (At1g07540)
Computational Description
TRF-like 2 (TRFL2); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 1 (TAIR:AT3G46590.2); Has 350 Blast hits to 338 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 309; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR