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11-6914-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2021804 [Map]; Strand: w
      • AT3G06520.1 - [+] show detail - agenet domain-containing protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G06530.2 - [+] show detail - ARM repeat superfamily protein
        Distance: -629; Region: promoter
      • AT3G06530.3 - [+] show detail - ARM repeat superfamily protein
        Distance: -629; Region: promoter
      • AT3G06530.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -792; Region: promoter
    Flanking Genome Sequence: 11-6914-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAACAAT GAAGGATGGT GGTCTGGTCG AGTATATAAG 
    ATAAACAACA ACAAAACGAG ATATGGTGTC TACTTCCAAA CGACTGATGA 
    GAGTTTGGAG TTTGCTTACA ATGACCTTAG GCCTTGCCAA GTGTGGAGAA 
    ACNGGAAAAT GGAGTCGTGT ATAAGGATGA GAAGAAGTTG GCTAACGGTT 
    ACAACTATTA ATGAAGAGGA TAAGGAAAAT GACTTGTTTA TAGTACATTT 
    TTTGTTTATG AACATATGTT TGAAGTTGAT GATGTCGTTA ATTGTCTGCG 
    TATAATATAA TATTTAACTT CTAATGAAAG AGGTCAGGTG TTAAGTTTCT 
    TTTTTGTTCT CTGTTCTCAC TTCCATTTTA CTGAAATTCT TGGATAGATG 
    GGTTTGTTAA TCTTGGCAAA TGTGATGTGA ACAGTGATTG TATCTTGACT 
    TTCTTACACT TGTTTCAAGA CTTTCTCGAT TGAGGAATTA AAACGCACAG 
    TTTTGTAATA GTAGCGGCAG ATTAGAGATG GGCTTTATTA TCAAGTTGTA 
    AAACTATTGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2021794 [Map]; Strand: w
      • AT3G06520.1 - [+] show detail - agenet domain-containing protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G06530.2 - [+] show detail - ARM repeat superfamily protein
        Distance: -639; Region: promoter
      • AT3G06530.3 - [+] show detail - ARM repeat superfamily protein
        Distance: -639; Region: promoter
      • AT3G06530.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -802; Region: promoter
    Flanking Genome Sequence: 11-6914-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    CCAAGCATCC ACAAGTTCAT ACAATTCATA TCGATACCCC TTTGGAATCA 
    GTGGAGGAGG AGGAGGTCTT ATATCTGAAC CTCTTGCTTC TTCCTTCAAC 
    AACTCTCTTT CATCGTCTGT TTTTAGTGTT TGATACTCCA CTGTGTATCT 
    GTTTTCGCCC AAGTAACTTA CGATCTTTGC AGAGAACCAT GAGGCTTCGT 
    AACCTGGTTC GTCGCTTCTA ACTTCCACCT CCATTCCATT GTTAAACACC 
    TTCTCTGCTC TCTCACAAGA TTTCAGCTTC TTCAATGGAG GTTTGTAACA 
    TTCTTCCGGC ACATCAGTCA ATACCTTGGA AGGAATGACC CATTGTCCAT 
    TGATCCAATC TTTGTGGGGC CTTAAGTTGA AATTTAAGAT TGTCGTTTCT 
    TCACCAGTTG AGATGATAAA AACTGAATAC TTATTAGAAC CTCCTCCTAG 
    GACTTTGGAA ACCCTACTGG TCCACCACCG TTTGTTGAAC CAAGCATCAA 
    CTATAACCCC TGGTTCATAG CACACAACAG GCGAGAGTTC TGAAGGAGGA 
    ACTGGTCTTA TGTCCTTGGC TTCTACCACA TCTCTCAGAG GGATCGACTC 
    ACCATCATCT CTACTAAATT TCAAGTGTTC AACAATGTAC TTATCATCAC 
    CTAATAAACA AAGTNTACGA GCACAATACC AAGAACCCTT GTAGCTACCA 
    NCCCGGGCCG NNNACCCNCT

AT3G06520.1

Model type
Protein coding
Short Description
agenet domain-containing protein
Computational Description
agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 523 Blast hits to 271 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06530.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar RNA-associated protein 10 (InterPro:IPR022125), BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024); Has 648 Blast hits to 415 proteins in 193 species: Archae - 0; Bacteria - 6; Metazoa - 222; Fungi - 268; Plants - 71; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06530.2

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; CONTAINS InterPro DOMAIN/s: U3 small nucleolar RNA-associated protein 10 (InterPro:IPR022125), BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024).
Link
InterPro Scan - TAIR

AT3G06530.3

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; CONTAINS InterPro DOMAIN/s: U3 small nucleolar RNA-associated protein 10 (InterPro:IPR022125), BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024).
Link
InterPro Scan - TAIR