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11-6917-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1148099 [Map]; Strand: c
      • AT1G04290.1 - [+] show detail - Thioesterase superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G04295.1 - [+] show detail - other RNA
        Distance: 0; Region: intron1 (NonCoding)
    Flanking Genome Sequence: 11-6917-1 - 5-prime edge 
    AACAACCACA TGAACAACAA ATCCCTAATT TCGAGAAAAA AAGAATCCCT 
    AATGACTTTT GTGAATTTGT TGAGGAAAGA ACGCAGGGAA ATTCTTACAC 
    GGAGGAGCAA CGGCGACGCN TGGTGGATTT GATAGGATCA GCAGTGATCT 
    ACACAGCCGG AGCTTCACAT TCCGGAGTTT CAGTGGAGAT CAATGTTTCA 
    TACCTTGATG CTGCTTTTCT CGATGTAACT TCCTTTCCTT CTTTCTTAAA 
    TTTATTAGAT GTCTTTCTTT GCAAAATTGA TTGACATATA TATAAAAAAA 
    AACACAGGAA GAGATAGAGA TAGAATCAAA GGCATTGCGT GTTGGTAAAG 
    CTGTANCAGT AGTGAGTGTG GAGCTGAGGA ANAANACGAC TGGTAANATT 
    ATTGCTCAAG GTCGTCATAC CAAGTACTTT GCTCCTCGTT CCAACCTTTG 
    ATCGTTCAAC CAACCTTTCT TNTTTTTTAC ATTCAATAAA CAACATCAAG 
    GTGTTTTTAG TCTTTGTCCC ATTNGCTTCT TATTATTATT GATACTAATA 
    AAACTACATT ACTATATGTT TTTCTAATAA TACAAACAAC CTTACTTTTT 
    CTCTATATGN GTTTACCTCG ATGTTGAACT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1148214 [Map]; Strand: c
      • AT1G04290.1 - [+] show detail - Thioesterase superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G04295.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: 11-6917-1 - 3-prime edge 
    AGGNATGTTA CCANGAGATN AGGAGGGATT ACCATGGAGC AGACTATACA 
    GGACAGGNNC GATGANATCC ACTTTAANAC CATTGGNTAC GAATCGTACG 
    ANGAATNTAT GAGGNAATTT CAGCCACCAT TGGNTCCTTG GCCTTTTCNT 
    CTTCATCTCC TTCCANATAC TTTTTCACCG ATTCTAGATC CNTTCTCTGC 
    TTCTTTCCCT TTTCTTTTTC CGNATCAACA CCNTTTGAGG GTTTTTTTTC 
    NAAACCCAAN TTTTTTTGNT NTNAATCANA TTTAAATGGN TNANATTTTT 
    TTNTANTTTT TACTCANNCN ANNAAAAAAN NGANCCAATN AANTTAAACA 
    NGGAANGAAA GAANCNNTTT NNNCCAANAA NGAAAAAANT CTANTTNNNC 
    AANAANNCCC CCCCCCNCNC NNATNGTTAT NTTNGGNCAN ATNGCNNTNT 
    TNTTTNNANT AAAAANAANG NGGNNTNTNA NTANTTTNTA AAANCTTTNN 
    GGGGNCTTNN NNGGAGANTG TTTGTGTNTN ANAAAANTNT CTNGANNCTN 
    TTNNTAAAAA AAAAAAAAAN GNTNTNANNN NNNGANGNGG NGTGATNNAA 
    AAGANANNNN CNTTGNNNAN NAANNGCGNT NNGNNGNAAA NTCCTTTCCC 
    NNTTNNAAAN AAANNNCANA CCNNANNANN CCCCCGNTTT TNNCGNGTGG 
    GGNGNGNNNG NNNCGNGNGN GTGNANNGAN TTAGTTGANN NTNATNNNNN 
    GN

AT1G04290.1

Model type
Protein coding
Short Description
Thioesterase superfamily protein
Computational Description
Thioesterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT2G29590.1); Has 964 Blast hits to 962 proteins in 292 species: Archae - 38; Bacteria - 286; Metazoa - 202; Fungi - 157; Plants - 213; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04295.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G04290
Link
InterPro Scan - TAIR