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11-6928-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3646076 [Map]; Strand: c
      • AT5G11420.1 - [+] show detail - Protein of unknown function, DUF642
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-6928-1 - 3-prime edge 
    TNTANACNAT GCAGAGGTAT TTTANCGANC GTTACCGACC GTTTTCATCA 
    TATGNANNTA TGTNTTAACN NGTATNTCGT TAGGCCTTAA GGGTNGACAT 
    TTGACACTCC GGTTTGGNNT GTCAAAATTT CAGTTTGGTT TACGTCCAGT 
    TTTGATATTT TCAAATTAAT CATTATAAAT CTATTNTTAA TATATGTACT 
    ANATACTNGT AAATAAACTT TTTGGTTTGG GTTATTTGGT AGACCTGTAA 
    AGTATTTCTA TTTCCATTAT GGTNTCCAAA AAATTGGCCT GGTTGGATTT 
    GATTTATGNG NCCACTTATA ANTATAGTCA TTNTGGTGTT AGANCATATN 
    NTAATGGATC GGTCACNTGA CGNNACATGT GTTANCCAAN ATTCAGAACA 
    ATAAATTAAT TGATATGATT TTGCTATTAT ATAATAAAAC AGANAATATA 
    TNGAAGAACG GAGGATTGGN AGAAAGNCCC TACGTACTCC CAAACNCAAN 
    AACCGGCGTT CTGGTTCCTN CCTTNATAGA AGATGACCAC TCTCCTNTAC 
    CCGCGNTGNA TGGGTCNAAT GACTNAAAGN CNTNAAACTA CATNGATGTC 
    CNNNCATTNC TNGGANCCCA NTAGNGCCNC CNANCCNTGN AACTNNNNNN 
    ANGGCANNAN AGCNCTATNG CTGAGGTNNC TNGGACCGTT TNTGGGAANA 
    ACTTANGTNC GNNNNNTTTN NNGNTGGANA NGNTTNCAAT GNNTGCCAAT 
    TATCGNNTGT GGAAGGGGGT ATNNNCNANA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3646070 [Map]; Strand: c
      • AT5G11420.1 - [+] show detail - Protein of unknown function, DUF642
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-6928-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTGTAACATG ATGGATCACA TTGCGTGATA 
    TCTGAAAAAA GATTTGATTA TACAAACTCA ATTCATATAA TAAATGAATA 
    CTTACTATTG GTGGGCCGAG GAGGGTATAG AGCNTTTGAT TGCCACACCA 
    TCAATGAGTG GTCCACAAGC AGGATCTTCC TCCTCACCAG GATTATGAAT 
    CACGATCTCT GCCACGTTAC TCTCGGCTTG GAACGCCCAC GCGTAAAGGT 
    CCCATCCACT GCTACTGTAC ACCGTCTGTA TAGGAATAAC GCCTGAGTCA 
    GGTGCCACCG ATATGTTGAG CCGTTCGTCT TGGGCACATG TCCTTGCGGC 
    ACTGAACGTC AGTGAGTAAT ACATTCCTTT TGTAACGTTA AGTCTTTGTT 
    TGATCGATGC CTCGTTGCCT AGCCGGATTG CGAACTTTCC GGCCGGGACT 
    ACGAGAAGCA TGTCTCCTTG TTTTTGACCG GACTTTATGT ATTCGACGAA 
    GCCTGAAAGC TCCCAGCTAG GAATCGCCTT CTTGTTTATT ACTTGCGTTC 
    CTTTCATGTC CGATGGTTTT GGTCCTAGTT CAAAGTCGCC GTTTGGTAAC 
    ATCCCTGCGT TGAAATTACA AAATTGCCCA AATTTTTTGA TTCAACGCTC 
    ATATAAAAAA GTGGTCTAGT ACTTATAGAT GTTCATTTAT AGTATNATGN 
    GTATATAGNA TTTTCTGCAG G

AT5G11420.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF642
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G25460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR