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11-6965-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16843326 [Map]; Strand: c
      • AT5G42140.1 - [+] show detail - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
        Distance: -1686; Region: intergenic
      • AT5G42146.1 - [+] show detail - unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; ...
        Distance: -1019; Region: intergenic
    Flanking Genome Sequence: 11-6965-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAC ACACACGGGT AGCTTCCACA ATCTATCACA 
    TATTTGTTCA CCATTTCAAT TTCACGAATA TAGAAGTTTC CGTCGTAAAA 
    ACATGGTTTC TAACAAATTT CATAAAAGTA GAAACCATGT TGAATTTTTT 
    GACAACCGAG AATCTAAACT CCATATTCAT AAAATGAAAT TGAAGCGGTG 
    AATAAAATAT GTGATATCTT CTAAACTACA TATGTGCATT GTTTAGTTAT 
    TATGGGCTTG GGCCACAACA CTAAATTTTA TAATCTGATA AAAGTCATAA 
    AACTGTAAAA GTTAGCCTCC CCGTAAGAGA TCACAGTTTT TGATGATTTT 
    TTGTATGTGA TGATTGTATT AAAACTTAAC CCAACAACTA ATCCAGTTCA 
    TTGGGCGTGT GTATATTGTA AATTAACTCA CGTTCTTATA TAAAATGAGA 
    AATGGAGGAG ACTTTAGCAC GAACGAAAAA GAAACAGACT ACTAACCTCC 
    TAAATTNTTT TAGATAAAAC AATCATGAGA CTTAGTACTT CATTTCCAAG 
    CTCATCGTCG NGTGTTCCAT TTTTATAGTT CTTTAAATCA TTTCTTCTAA 
    AGTCACCACT TCGNGACTTC CTTCTAATCT CAAGGGTTCN ACAAAGTAGC 
    TTTTTTACCC GCTACGGGTG AANGTTGAAA TTTNCAATTT AANTTTANGT 
    CNGATTAGAC CNAAGTNNNA ATGGNTGGAA NGAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16825048 [Map]; Strand: w
      • AT5G42080.1 - [+] show detail - dynamin-like protein
        Distance: -292; Region: promoter
      • AT5G42080.3 - [+] show detail - dynamin-like protein
        Distance: -291; Region: promoter
      • AT5G42080.2 - [+] show detail - dynamin-like protein
        Distance: -295; Region: promoter
    Flanking Genome Sequence: 11-6965-1 - 3-prime edge 
    TCCACATGAA ATCACTTTAC TCTACTAATA AGTGATAGTT TTTTTATTCG 
    AATTTTAACT CGTTACATTC TTTTACAAGA AAATCGACCT TGTTATATTT 
    ATTTATATGG TTGGTCATGC ATGCAATAGT ATTATCATTA CTTTTACCTG 
    GTTAGAGAGA TGTGGAATAT TAAGGGATTG GTTGAATATA TACAACACAC 
    CTCGTCGTTT TTATTTTGTT TTTGGTCAAC TCCTCGTCGT CTTTGAATT

AT5G42080.1

Model type
Protein coding
Short Description
dynamin-like protein
Curator Summary
Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
Computational Description
dynamin-like protein (DL1); FUNCTIONS IN: protein binding, clathrin binding, GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1); Has 2870 Blast hits to 2761 proteins in 321 species: Archae - 2; Bacteria - 66; Metazoa - 1056; Fungi - 810; Plants - 578; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42080.2

Model type
Protein coding
Short Description
dynamin-like protein
Curator Summary
Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
Computational Description
dynamin-like protein (DL1); FUNCTIONS IN: protein binding, clathrin binding, GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1); Has 2738 Blast hits to 2718 proteins in 315 species: Archae - 2; Bacteria - 44; Metazoa - 1052; Fungi - 806; Plants - 508; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42080.3

Model type
Protein coding
Short Description
dynamin-like protein
Curator Summary
Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
Computational Description
dynamin-like protein (DL1); CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1).
Link
InterPro Scan - TAIR

AT5G42140.1

Model type
Protein coding
Short Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Computational Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT1G76950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42146.1

Model type
Protein coding
Computational Description
unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR