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11-6975-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1562 [Map]; Strand: w
      • AT3G01015.1 - [+] show detail - TPX2 (targeting protein for Xklp2) protein family
        Distance: 91; Region: intergenic
    Flanking Genome Sequence: 11-6975-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAT TTTACAAGAC TCTTGTAATC TCATGTTTAA ACTGGGTAAC 
    CGAATACTGG AAATAATCAT CAGAATATAT ACCTTGCTTT CTTCTTTGTT 
    TTATCTTTGA AGATTCATGA TTACAAAGAT GGAACAAGTA CGAGGAAACC 
    CAAATCTTGC AAGTTCCAAC TAATTGGTTG CTTCAAAGAA AATGTAAGAT 
    GTTGTTTATA AAGAGATGAT ATGGACAAGG AACAAGATTA TTGAATGCAA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 156874 [Map]; Strand: c
      • AT3G01410.2 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -1235; Region: intergenic
      • AT3G01420.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 2592; Region: intergenic
    Flanking Genome Sequence: 11-6975-1 - 3-prime edge 
    AGGGGGTTCA ATGTCTAAGA GGATTTGTAA TGATACTCTC AAGGCAATGA 
    AATAGTATAA TCCACGACTA TAAAGACAAA TCACTTCTTT GACTCTCTTT 
    TCACCTTTCA TTTTTTTTGT GATTAGTTAA TTAAGACAGA GGAGCACAAT 
    ACTACAAAGA AGACTCAAAC TATAAATGTT ATATGTCTAN AATGTATATT 
    GGTTTTTTTT AATACTAAAT CAAAGGTGAT AAAGAAAGAT TTGATCAAAT 
    CTGTATCCAA TCAAAATTTG ATAAATTTTT ACCAATTTAA CACATTTTCT 
    AACTTAAACT CTATAAATCT ATACATAATT AAGTNTNTAA TTACTATCCA 
    NCCCACTATT NAACCACATT GNTNAANNAT AAATGAATGA TTAANTCTCA 
    AATCCATNCN TAGTNTANGN CATTATNNTN ANTAANAAAC CATTNAAACC 
    TTGANCNANG GNCGGGGCCG GTGGANCGNN NNNTTGAGNN TGNANNNNCT 
    GNTATNNANN NTNCNANTTN GNNCGANAGA NANNGNGANA NGACAGNCNN 
    TGTNCNNGAG GGTGCNNNNG NANANGGANA NNGNGAGCNG GCANAGTGNG 
    NACGNTNNGT NNTGNCTCCN AGNGATGAGC GANNCGNGCN GGAAGAGNGN 
    AAGGGANTNN GCNCANNNCG CNNNCGNNTN NNNGANNGGG ANNAAGAGAN 
    GNNNTNACNN NGANCNNNGN NNGTGGGNGC GAACNGNNGA GCGCTNNNNT 
    NGTTNNCCNN NNNAAANNAN

AT3G01015.1

Model type
Protein coding
Short Description
TPX2 (targeting protein for Xklp2) protein family
Computational Description
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G15510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01410.2

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 3179 Blast hits to 3179 proteins in 588 species: Archae - 77; Bacteria - 1109; Metazoa - 13; Fungi - 0; Plants - 1505; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01420.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.
Computational Description
DOX1; FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Haem peroxidase, animal (InterPro:IPR002007); BEST Arabidopsis thaliana protein match is: alpha dioxygenase (TAIR:AT1G73680.1); Has 1465 Blast hits to 1381 proteins in 214 species: Archae - 0; Bacteria - 94; Metazoa - 1085; Fungi - 168; Plants - 70; Viruses - 1; Other Eukaryotes - 47 (source: NCBI BLink).
Link
InterPro Scan - TAIR