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12-0052-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9819577 [Map]; Strand: c
      • AT1G28120.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubi...
        Distance: -4033; Region: intergenic
      • AT1G28130.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: -5709; Region: intergenic
    Flanking Genome Sequence: 12-0052-1 - 5-prime edge 
    GGTTCAAACA CTAAACTAAT TCAATCGGGT CAAACATAGT TCCGACAACT 
    AGACTTTAAA AAATGTTGCA TTAATGCAGA AACCAATAAT TTTTCTTAGG 
    GCGTAGTGAC CAATAATTAG TTGATCAATG TTTTAAAAAA AATGTGGCAT 
    AAGTTTAAGG TTATTTAGTC GTTTGCCCAT GCGCTCCATC ATGGAAAGAT 
    AAAGAAAAAA GGTAAAAACT TATAGTTTTT TTCTTTAATT AAAATCGTAT 
    TATTACTTTG TCTTCTAACA AGACGAAAAT CACAATTAAA TAGTAATCTA 
    NAATTAGGGN GCATGTGAAA NAAATATAAT TTGGTTGACG ANATGTAATA 
    NAACATGTTG TTTCGGTTGG CCTTTAAACA TCTCAAAACC NCAAACGAAT 
    NTNTAAACNT TACNTAATTA GACAAAACCN TAACATAAAT TACTNTNTTT 
    GTCAAANCTT ACGTTTTGTC ATTNTGCNAA AAANTTNGGC NANAGGACTT 
    TTTTANCACT CTAAACTTTN TNGGGAGNGA TTTAACTTGT TGGNCTCNGG 
    ACATNNTNAA ACNNCCAAAN TTTTTTGGGT TAACNANCCN GGGCCGNNNA 
    ACANCCNGCC CCNTANGGGG GNNNNNNNNN CNNNNGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9819693 [Map]; Strand: c
      • AT1G28120.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubi...
        Distance: -4149; Region: intergenic
      • AT1G28130.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: -5593; Region: intergenic
    Flanking Genome Sequence: 12-0052-1 - 3-prime edge 
    TTTGAACCCA CTTGGATCAA GTGTCATAAG AAAAAAAAAC ATATTTAGTG 
    TTAGATTTAT CCGGAGGTTC TACAGATTTT AATAAGTATT CAAGTGANAG 
    CCGGTTGTTA GTATTACCGA CTAATTAGGA CATAAATCAC AAACTTGTGA 
    CTTAAGTGTG ATACATGGCT TTGACCAACA AAGAAACATA ACTGGACCCA 
    GCCAATTGAG TAAAATCGAA GATATATATA TATGTACTTA ACATTATCTT 
    CAACATTTGC CCATACTTAA AAGCATAAAC ATTTACCTTT CATGGGGATT 
    ACATTTTTAA GTCTATAGCT ATATCCATTA TTCAGTTATG TGCATAAATC 
    AGCTTCTTCT TCTTCTTCTT TTGTAACTAA AGCATGCATA ATAANAAAGC 
    CGATATTGGA CATANACCAA CAAAGCTATG TAATTGGAAT GATCANCCAA 
    TTAGGTAACA CATCAAAGAA AANAAATAAT AGATCCTCGG ATGTTTGGTA 
    AATTTATTAA TAATTATTTA CACAAGTTGG TAATTGNGGA ATAATTTGTC 
    TACACAAGGT TGACAATTGN GGCTGAGCGA TTNTGTTANA GCGCATCAAG 
    TTGAAAGGGT AGGATTTTGT TGGACTCTTT TGGGGCCTTG GGAAAATAAA 
    ATGATATAAT CGGGGNGGTT TGGATGGGCT TCNCCAAANA NAGNGTCATA 
    TTTTTTACCT NGNAACCTTA AANATTATGC CCCCANCGAA TGANAATTTC 
    TACATTTCCC C

AT1G28120.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28130.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
Computational Description
GH3.17; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1405 Blast hits to 1296 proteins in 239 species: Archae - 0; Bacteria - 491; Metazoa - 54; Fungi - 2; Plants - 672; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Link
InterPro Scan - TAIR