Home
Mutant Lines
12-0081-1

12-0081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 18927370 [Map]; Strand: w
- AT1G51060.1 - [+] show detail - histone H2A 10
  Distance: 0; Region: exon2 (CDS)
- AT1G51070.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -507; Region: promoter
- AT1G51070.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -517; Region: promoter

CTTGGANGCN CCGGNCTTAT TNNGAAGAAN AAGATNGANA ATGTNAGGCA 
CTNACACCTC CCTTAGCAAT AGTCACATCT CCAAGCAATT TGCTCAATTC 
TTCATCGTTC CTCACCGCCA ATNGAATATG CCTTGGAACA ATCCTCGTCT 
TCTTGTTATC CCTCGCTGCG TTTCCAGCCA ATTCCAATAC CTAATTTTTC 
AAAATTTCCC CAAAATCAGT CAAAATTAGG GTTTATAGAA ATTGAACTAA 
AAGATCGAAA ATTTGAAGAA TAGGGAAGAG GAATTACCTC GGCGGCGAGG 
TATTCGAGAA CGGCGGCTAA GTAAACCGGA GCTCCGGCAC CAACACGTTC 
GGCGTATTTG CCTTTCTTCA AGAAACGAGC GATACGACCC ACAGGGAATT 
GGAGACCGGC TTTGCTGCTT CTTGTTGTTG CCTTCTTCGC AGACCCAGAT 
CCGAGTGTTT TACCACGACC CGCCATTGAA ATCGATTAGA ATACTTTTGT 
GTAAAGATGA GAGGGAAACA GTTATAAGAA TCGAATTTGT TGGTATGGAC 
TCTCTCCATC TTCTCCAGAG TTTATATACT GTTTTAGATT CGNCTTANCC 
ANTANNAANA AACTACNCGG ATCGCTGNTT ATCACCGNTA GATAATGTTT 
TANTCACGGG GAATATTCNA GATTAGGATC ACCAGCCGGG CCGNNGACCC 
CCGGNCCCCT ANAA

AT1G51060.1

Model type: Protein coding
Short Description: histone H2A 10
Curator Summary: Encodes HTA10, a histone H2A protein.
Computational Description: histone H2A 10 (HTA10); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 13 (TAIR:AT3G20670.1); Has 3904 Blast hits to 3899 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 2554; Fungi - 302; Plants - 612; Viruses - 4; Other Eukaryotes - 432 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G51070.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic Helix-Loop-Helix 115 (bHLH115); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G54680.1); Has 799 Blast hits to 780 proteins in 147 species: Archae - 10; Bacteria - 89; Metazoa - 90; Fungi - 16; Plants - 475; Viruses - 2; Other Eukaryotes - 117 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G51070.2

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic Helix-Loop-Helix 115 (bHLH115); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G54680.1).
Link: InterPro Scan - TAIR