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12-0137-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21530349 [Map]; Strand: c
      • AT1G58140.1 - [+] show detail - transposable element gene
        Distance: -965; Region: promoter
      • AT1G58150.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-0137-1 - 3-prime edge 
    CCTAAATCCA AGTTATTTCC CGGACACGCG GCGTGGAGTT ATCATCATTC 
    GGGCGGAGGT GGAGGTGGAG GCGGTGGGCG TGTATTTACA AATAAAGTAA 
    ATGCGGTAGA AGAATT

AT1G58140.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.6e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G58150.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR