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12-0213-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30345248 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: 12-0213-1 - 5-prime edge 
    GGGATAAGCG GGAAGTTTCT GTCAAACAAA TCAAGAGAGA GCAATAAAGA 
    TCATGTTCCT CAAAAGACAA TATATTAGTG GTAAATATTC TGTAACATAT 
    ATTTACCTCT GATGGTTGTG CAGCCCATAA AAAAACCCTG TTTCGAAGCT 
    GAGGGAGCCC ATAAGATCCA GCAGCCATCA TGCCCAACCG CGTCTGGTAA 
    TTCATCGCAA CAAAGCTAGC TACAGCATGA CGTGCCAGGA AACCCTTTGA 
    AAACCTAAGA AGGTCTACAA CATTTTCCAT CAGCACATAG TTTGGCTTGA 
    GGAAGTCAAT GATGTCTAAA AACACCAAAA GTTGCTGGTT CTTCTGATCT 
    TCAAGCGGTG CTTCATTGTT TCTATACCGG TTATACCCAC TGATCCCTTG 
    GCAAGGGGGC CCACCGCACA CTGTGTAGAC AGTACCCTGA AAAATCATCA 
    AACATTTAGT TAANATTGTA AATAGCTTTA TATTAAAAAA ATCATATAAA 
    GCAAAGATAT TATCTTACCG GAAGTGGTAA GAGATGAGAC TTAAACCCAT 
    CTATCACGTA CTCCTTCAGC TTCTCCTTGC AGTTGCTGGA GAAATATAAA 
    GTAATTATCA AAGAAATTAT CAATACAAAA CTAGGTTAAT ATANAAAAGT 
    TACCCTAAGC CANAGTAAGG GTCCCATGTG TCATAACTAG AATTGTNTCC 
    CTTCCCCTTA CCTGANATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30345364 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: exon12 (CDS)
    Flanking Genome Sequence: 12-0213-1 - 3-prime edge 
    CTTATCCCCT CCCAACACAT GAAGTTGCTA AAAAGTTCAA CACACCTAAA 
    GAATT

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR