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12-0219-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23210646 [Map]; Strand: w
      • AT1G62680.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -733; Region: promoter
      • AT1G62690.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-0219-1 - 5-prime edge 
    GGTCAAACAA NGCAGCCNGA CGTGNAGCNN GNATCTNCGG GCAGNGGATA 
    ANGGNACCGG GCCGTAGACC NGNNNTGCNA AACNANACCN ANCNNNNNTG 
    GCNGAACGNG CACGTTGTTA AGATTATGTG AACGTCAAAC ATCGGCTNCT 
    TCACCAGAGC GTCATCTGTG TTTNTNTGTC CTNTNGACAA TGAGTNACAC 
    TTCCATTNNA ATCAANAACC GATCCTTCAT CCNANAAATC TTNAGATCTA 
    GAATGACCAG NNNGGGCCGT CNACCACGCA GAGCGCTAAA GTGGGGGAAA 
    TATGGNANAA AATATGGGAT ACCTGNNGNA CCATATGTGA AGCCNNNATG 
    CATACAACAT GTGCAGNGAA GTNNATACCT TNNGGNGNNN ACNAACCAAA 
    ATGCCNNGAC CATGCTCTAC TCTTTTNNNN AGACANGCTA CCAGGCCNGG 
    GNNNGNNGAN ANGNNGTGNN NGNNAGNGGN NANNANGGNA GGNNNNGGGG 
    NGAGNGGGGA AANGNGGNNN AGNNNGNNGG NNNGACNANG GNNGNGNNNN 
    NNNGGNGGGG GNGGGNGGGA GGGNCNNNNA NGANGNGGNG NNNGGNGNGN 
    GGGNGAGNGA GNNGNGGGNN GGGNNNCGGN NNNGANNGNN GANNGGNNNG 
    NGGNNNNGNA GGNGGGNANG GGNGNGNGNN NNNNGNCGGN GGGANGGNGN 
    NNNGNNGAGA NGNNGGANNA GNGNGGGANN AG

AT1G62680.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63130.1); Has 64113 Blast hits to 15255 proteins in 308 species: Archae - 5; Bacteria - 67; Metazoa - 910; Fungi - 1189; Plants - 59601; Viruses - 0; Other Eukaryotes - 2341 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62690.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR