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12-0242-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26300268 [Map]; Strand: w
      • AT1G69850.1 - [+] show detail - nitrate transporter 1:2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-0242-1 - 5-prime edge 
    ACCGTGACGG CCTTTCACGG CTGCTCTGTT TCTCCAATCG GCGTAGCCTT 
    CCCATCTTGA GACCTCTTCT TCCACTTCCT GTAATAATAT GGCAAAGAAC 
    AAAACAAGAC TTTGAGAAAA AGACATATAT TTCTATAAAA GGAAACATCA 
    TCAAATATTG ATTTCTTGAA CGATGAAGAA AATAATGTGA GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26300152 [Map]; Strand: w
      • AT1G69850.1 - [+] show detail - nitrate transporter 1:2
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-0242-1 - 3-prime edge 
    GTCACGGTGG CATGCTCGCC GCCTCTTTCG TCTTAGGTCA GTTTCAAAAT 
    TCCAAATTTA CCCCTCGATT CTCTTAATGC ATCTTTTTCT TTATCATCCA 
    CATATTTATA TTAAGAACGA TTCTCTAATG GATCATTGTG ATTGATTCAT 
    ATATATTTGT CTCTTATGAA GTGGTGGAGA TATTAGAGAA TCTAGCGTAT 
    TTGGCGAATG CGAGTAATCT TGTGCTATAC CTAAGAGAAT ACATGCACAT 
    GTCTCCATCA AAATCGGCAA ATGACGTCAC CAATTTCATG GGCACAGCTT 
    TTCTCCTAGC TCTCCTCGGT GGTTTCCTCT CCGACGCTTT CTTCTCCACT 
    TTTCAAATCT TCCTCATCTC AGCTTCCATC GAGTTTTTGG TAAACCTCTC 
    TTAATCATTC TTATAATCAC TTCATTGTTT TACATTTTGT TAATCTTTAA 
    AATTTCTAAA CTTAACAAGG AACAACAAAT CAAACTCCAC TTATAAAAAT 
    ATTCAGAAAC TTTGTTATCC ATTAGATTAC TTTAGTTTTC TTTTCTCTAT 
    CGCTTAAGTT TTAAGTTACT ACCGTTGACT TTTGTTTTTA ATGGCTAAGC 
    CACCACAATC ATAAATCCGT TCACATTAAA AATAGATCCC ACATGTATAT 
    CTATACNATT ATTAGCNTAA AAGAAAATTA TCACACCTTG AAAATATGGT 
    TGTAGCAAAA AAAATCCACG AACCAGGCGT GC

AT1G69850.1

Model type
Protein coding
Short Description
nitrate transporter 1:2
Curator Summary
Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.
Computational Description
nitrate transporter 1:2 (NRT1:2); FUNCTIONS IN: transporter activity, calcium ion binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G27040.1); Has 5870 Blast hits to 5639 proteins in 1033 species: Archae - 0; Bacteria - 2327; Metazoa - 503; Fungi - 400; Plants - 2186; Viruses - 0; Other Eukaryotes - 454 (source: NCBI BLink).
Link
InterPro Scan - TAIR