1. Home
  2. Mutant Lines
  3. 12-0262-1

12-0262-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22702245 [Map]; Strand: w
      • AT1G61665.1 - [+] show detail - pseudogene, similar to serine/threonine kinase, blastp match of 55% identity ...
        Distance: -499; Region: promoter
      • AT1G61540.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -253; Region: promoter
    Flanking Genome Sequence: 12-0262-1 - 5-prime edge 
    GTNCAGNGGA CAANNANNAN TGATAGGNTN TCATATNAAC CNNAAANGAA 
    TGCNCGATAT CGCGATAGNT ANTCCGCAGA TTGATGTANT CATACATATC 
    GGGCATNCAC CAGATTCAGA TCCATATAAA AAGTTTTGTG ACTCATTTAC 
    CTAATTCAAA AAACGTTTTC CGTAAGGCCC ATTTACATGC TAACTTTGGG 
    CCTATATGCC TAGGTTTTGG TCGATTTTTG AAATCAAGGA AACCCTTATT 
    ATTCCTTCCT TGATAAAGAA GAATCTTCGT TATTGCCCTA TTGACGTCCA 
    AAGCCAGATC TTCCATACGC CGCCATGAAC GGCGAAAAAC CACTCCGTGA 
    GAGGAAGAAG AAGATGCCGN ATCCTTCTCC GGTGACAGAA GAACCAATCT 
    CTATCATGTC ACTTCCTTAT GACTNGNTAT TGAACNGCTT CTNACTCGGC 
    TCAAGGNTGT ATTANCCAAC TCTCTCNCGN GGNNNNNAAA ANTTTANGAT 
    NTATNGTTAC TNCNCGCGAA CNTNNGNGNG ATGNNAGGAN GCNTNAAANC 
    GANANGGGNA NNGGGGGCTA TNNGNGGGNN NGTNANGGNG NGANGNGGGG 
    NTNGGNGNAC TCGNGGGCGA NGANCTNGAA GNNACNGAGC GNAGGGGNGG 
    NAAAGGNGGG GCNGNNNAGG GNNNGGGGGG TGAGANGGGC GNTCGGGGNN 
    CAGAGAGGNA AAGG

AT1G61540.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39590.1); Has 1659 Blast hits to 1561 proteins in 111 species: Archae - 2; Bacteria - 82; Metazoa - 518; Fungi - 4; Plants - 1010; Viruses - 4; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61665.1

Model type
Pseudogene
Computational Description
pseudogene, similar to serine/threonine kinase, blastp match of 55% identity and 3.4e-14 P-value to GP|2181190|emb|CAA73134.1||Y12531 serine/threonine kinase {Brassica oleracea}
Link
InterPro Scan - TAIR