1. Home
  2. Mutant Lines
  3. 12-0270-1

12-0270-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23401746 [Map]; Strand: w
      • AT3G63360.1 - [+] show detail - defensin-related
        Distance: -155; Region: promoter
      • AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -330; Region: promoter
    Flanking Genome Sequence: 12-0270-1 - 3-prime edge 
    TTGGCAAATA TAAATCAGAG AAGATTACTT TATTCACAAG TAATCGGGTT 
    TCAAGGAGAA ATTAATTAAC GGAGAATAGA GCTGAAGGAG CCGCGGGTGT 
    GTCTCCGCAC GTCATCTATA TATAATCATG CNGTTCGTTT TTGATTGACA 
    TGTTCTTCTT TGGTGTAGCA CTAAACCTAA AAGTCAACGA AACATAAGAA 
    ACAAAAAAAT GGGGAAGACG ATCAGCTTCT CAGCCATAAT CCTCGTATTC 
    TTATTGGTTT CCACAGGTAC ATGCATACTC TCAATCAAAC TGCAACCCGA 
    TCTGGAATAA CATCATATAT TTAATTGCTG TGTATACATA TAGGATTGAT 
    GAAGCAAGGA GACGCGCAAG CGCAAAAGTG TGAGTGGGAG TGCAAGCT

AT3G63360.1

Model type
Protein coding
Short Description
defensin-related
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
defensin-related; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63370.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 44; Fungi - 62; Plants - 47536; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).
Link
InterPro Scan - TAIR