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Mutant Lines
12-0342-1

12-0342-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 4159289 [Map]; Strand: c
- AT1G12250.1 - [+] show detail - Pentapeptide repeat-containing protein
  Distance: 0; Region: exon1 (CDS)
- AT1G12250.2 - [+] show detail - Pentapeptide repeat-containing protein
  Distance: 0; Region: exon1 (5UTR)

GGTANNGCAT NNCGCNNCNG GGGAACGATC NNNGNCCGGA CGCAGANAGA 
AAAAGNNNNG NCGTCGACNG CGCAAANCTN CTAGNNCTGG GNCAGGGGAN 
ANANGATGCC CTTCAAGGNT TGTAGTAAGA AGAGATGAAT TTTGCACGTG 
TGAAGGATTT CGAACTTTAT CCACTTTGCT TGGGCAAGGT GTGCACACGT 
ATGTCACTTA TGTTCACCTG TTTTGTTCTT GGTTTTCTAT TCTCTTCCAA 
TTCCAAGTCT TTCACAATTT ACTTTGACTT TGTTCTTCCT TGNGACAAAG 
AACACAGAAG CAGTNGAAAC AAAACAAATC AGATCTTTAG TTNGGCTTTC 
AACAAAATTC AGTAACAAGG TCATGAACAG AAACTTATTG CTTTGCTTAT 
ATACCGATGT CTGCGTGAAA TGAATCCAAN TANNNNANNT NNGNAGATTT 
TNACAANGCA ACTANTTTAG AATGGGGNTT ACTCTNNGAG GNNATTNNGG 
ATNGANNTCG GGGANTTNAG GNGNACGCNG NNTGGTCTNG GNTTNGAGNG 
NNTNAACTNT TGGGNNNGGA NAGGAGGANN NNCNAANNCG GNGGGTGAGG 
TTTCCNNNNN NNGNNTNGNG GNNNGTNGGN NGNNGNNGGA AAGNTNNNNA 
NNTNNATNNA CGANCNACNN NNNNATTNNA TCG

3 prime edge [+] show sequence

Chromosome: 1; Position: 4159400 [Map]; Strand: c
- AT1G12250.1 - [+] show detail - Pentapeptide repeat-containing protein
  Distance: 0; Region: exon1 (CDS)
- AT1G12250.2 - [+] show detail - Pentapeptide repeat-containing protein
  Distance: 0; Region: exon1 (5UTR)

CTTCTGTCTC AAGATCTCCT TACCATTTTC AGAGATACCC ATTGAGACGT 
CTACAGCTAA GTTCCCGTTC AAACTTAGAA ATCAAAGATT CATCAAACAC 
TAGGTGAGTG AGACTCGAAT ACTTTCACCT AGCAAAACAT AGAATCTCAA 
TGTTTTTCTT GTTATTTGCA AATCTTAGTG TCTTAGAAAC TTAGGGGATT 
GAATTGTTTT TCGAAAAGGG AAGGTTGTTG TTCCAGCGCT GAGTCAAATA 
CATGGAAGAG GATTTTGTCT GCAGCAATGG CGGCGGCTGT TATAGCCTCG 
AGCTCCGGCG TTCCGGCCAT GGCAGAGCTT AACAGGTTCG AGGCCGATAC 
ACGTGGCGAG TTTGGGATTG GCTCGGCTGC TCAGTACGGT TCTGCTGATC 
TCAGGTATCA TTTAGAGTTC TTGTCTTAAA GTTCTTTAAA GAATTTCATT 
TGTTTTTGAT GGTGATAGAC TGATAGTTCG TTGAGATGAA CTCTGTTTCT 
TTTGCAGCAA AACAGTTCAC TCCAATGAAA ATTTCAGGTA AAAATTTGAC 
TGTAGTTTGT CATGATAGAG TTTAAAGCTA CCANCCCGGG CCGNCGACCA 
CNCGGCCCCT TTAA

AT1G12250.1

Model type: Protein coding
Short Description: Pentapeptide repeat-containing protein
Computational Description: Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134; Bacteria - 5724; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1589 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G12250.2

Model type: Protein coding
Short Description: Pentapeptide repeat-containing protein
Computational Description: Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7775 Blast hits to 4220 proteins in 505 species: Archae - 143; Bacteria - 5794; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1598 (source: NCBI BLink).
Link: InterPro Scan - TAIR