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12-0418-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22702219 [Map]; Strand: w
      • AT1G61665.1 - [+] show detail - pseudogene, similar to serine/threonine kinase, blastp match of 55% identity ...
        Distance: -473; Region: promoter
      • AT1G61540.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -279; Region: promoter
    Flanking Genome Sequence: 12-0418-1 - 5-prime edge 
    GGTNACGNAG AGCNCGATAN GNCACTNCTC CTGANCAGGA NNAGNAGNGA 
    TAGCATTNNC GTATNAGNCC NCTANAGNAA TGNTCTGATA NTCCAGATNT 
    TAATCNCAAA NTNGGGNTNA TANTATTNTC ATCCACCACA TTCAGATCCA 
    TATAAAAAGT TTTGTGACTC ATTTACCTAA TTCAAAAAAC GTTTTCCGTA 
    AGGCCCATTT ACATGCTAAC TTTGGGCCTA TATGCCTAGG TTTTGGTCGA 
    TTTTTGAAAT CAAGGAAACC CTTATTATTC CTTCCTTGAT AAAGAANAAT 
    CTTCGTTATT GCCCTATTGA CGTCCAAAGC CAGATCTTCC ATACGCCGCC 
    ATGAACGGNG AAAAACCACT CCGTGAGAGG AAGAAGAANA TGCCGTATCC 
    TTCTCCGGNG ACAGAANAAC CAATCTCTAT CATGTCACTT CCTTATGACT 
    TGTTATTGAA CTGCTTNTNA CTCGTNTNAA GGGTGTATTA TNCAACTNTN 
    TNCCTNNNTN NCAAAACTTT NNNATNTATN NTTTACTTTN ACNCNAACTT 
    TNNNANATNN NANCNCNCNN AAACNNNNCN GNANAANGGN NNNNNTNTNT 
    GNNTNNNTNN NNANANGAAA ANNNANNNNT NNNTTTNTNN NNGG

AT1G61540.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39590.1); Has 1659 Blast hits to 1561 proteins in 111 species: Archae - 2; Bacteria - 82; Metazoa - 518; Fungi - 4; Plants - 1010; Viruses - 4; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61665.1

Model type
Pseudogene
Computational Description
pseudogene, similar to serine/threonine kinase, blastp match of 55% identity and 3.4e-14 P-value to GP|2181190|emb|CAA73134.1||Y12531 serine/threonine kinase {Brassica oleracea}
Link
InterPro Scan - TAIR