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Mutant Lines
12-0420-1

12-0420-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 18036760 [Map]; Strand: w
- AT4G38590.1 - [+] show detail - beta-galactosidase 14
  Distance: 0; Region: exon4 (CDS)
- AT4G38590.2 - [+] show detail - beta-galactosidase 14
  Distance: 0; Region: exon4 (CDS)

GATNTAGATT ACCGTGGAGA GGGAACGANC AATGGCNGAN AGAGAGAGAN 
AAGANAGTTT CTNGGGGAAA GCTCAAAGCT TCCACCCNGG GCCGNATNCC 
ACCCNTNCCC CATANNGAGA ACCTTTNANG GAACATACAG AGAGATATGT 
GAGGAAAATA CTTGGGATGA TGAAGAAAGA GAAGCTGTTC GCTTCACAAG 
GAGGTCCCAT CATCTTGGGA CAGGTACACA TATACTACAC ATTCATCATC 
CATCTTGTGA AAGCAGAAAC ATTGAAATCT CTAAGATTAC ATAAATAAAT 
GGCAGATAGA GAATGAGTAC AACGCGGTTC AGCTAGCCTA CAAGGAGAAT 
GGAGAGAAGT ATATAAAATG GGCAGCAAAT TTGGTGGAGT CAATGAATCT 
GGGAATCCCC TGGGTTNTGT GCNNACAAAA CGANGCTCCT GGCNNTNTGA 
TNNATGCTTG NNNNGGNNGG NNTTGCGGNN ANNCTTTTNN NNGNCCNNNN 
NNAA

3 prime edge [+] show sequence

Chromosome: 4; Position: 18036644 [Map]; Strand: w
- AT4G38590.1 - [+] show detail - beta-galactosidase 14
  Distance: 0; Region: exon3 (CDS)
- AT4G38590.2 - [+] show detail - beta-galactosidase 14
  Distance: 0; Region: exon3 (CDS)

TTTCGTACCC GTGGTTCCAT TCGGCTTGGA TAAAGGGTCC GAGTCTGAGA 
GTGACATAGA GACCTTTCTC GTGGATTAGT TTGATGAATT TCACCAAGTC 
AAATCTCCCC TTGAAATCAT ACTGAACCAT TTTAAGGCAA ATGATCAAAT 
CACCCAAAAA GAAAAAAGAA GGAATGATCT TAAGAGAGAA TTGAAGTCGA 
TGATACCTTG CCTTGTTCAG GCTCATGGAC ATTCCAGAAA ACATAAGTTT 
GGATGGTGTT AAGTCCCCCA ATTCTAGCTT TGTCAATGAT ACTGGGCCAC 
ATCTGCAACA AAACCAGAAT CCGATCCATG AAGTGAAATC ATCTTTTTGA 
TTGGGTAATA ATAAAAACAG AGTAGACGTG CTTACGTCAG GTGTGCTTCG 
AGGGTAATGT ACAGAACCAG AGAAAAGGAG CTCTCTTTTT CCATTTATGA 
TCAATGAAGT TCCGTCGTAT GTTACTCCTT TCTTCTTTTT CTCATCATCA 
TGGCTGCTTG CCTTGGAACA GAGCGAAATT ACAAGTAGAA TCGCTATCAA 
GTATCGTGTT CTCGACTTCA TCCTAATTCT ACTTGATTGC TCATCGATGA 
AGACTTTGAT ACATAAATGT TACAACTTGN ATTATATTGT TCCCTTGTTT 
TAAGGATGTC CTAGGTTAAA GAGGGAAGCT CGGAACCCTT GT

AT4G38590.1

Model type: Protein coding
Short Description: beta-galactosidase 14
Curator Summary: putative beta-galactosidase (BGAL14 gene)
Computational Description: beta-galactosidase 14 (BGAL14); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 23317 Blast hits to 9736 proteins in 810 species: Archae - 62; Bacteria - 1372; Metazoa - 9840; Fungi - 2130; Plants - 1323; Viruses - 462; Other Eukaryotes - 8128 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38590.2

Model type: Protein coding
Short Description: beta-galactosidase 14
Curator Summary: putative beta-galactosidase (BGAL14 gene)
Computational Description: beta-galactosidase 14 (BGAL14); FUNCTIONS IN: sugar binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 3072 Blast hits to 2969 proteins in 587 species: Archae - 15; Bacteria - 892; Metazoa - 685; Fungi - 433; Plants - 695; Viruses - 19; Other Eukaryotes - 333 (source: NCBI BLink).
Link: InterPro Scan - TAIR