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12-0437-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3110976 [Map]; Strand: w
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: -950; Region: promoter
      • AT3G10100.1 - [+] show detail - transposable element gene
        Distance: -802; Region: promoter
    Flanking Genome Sequence: 12-0437-1 - 5-prime edge 
    GAAAAACTAA CAAAATCGGT TATACCNATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCCAC ATATTTGAAG NCCTTNNGGN TTGANNGGAA 
    AAAGATAGTC CAATAGTTTG GCTACACCTA TCTTGGACTA TATATATTAA 
    ACACATTTCG CAATCATCCA AAGACTCCAT CTCATACAAC TAGACACTAC 
    ATAAAAACGG GTATTCTAGC ACTCGGAAAA TGCTNNGGGN NAATAAAGTA 
    ATGTTGCAAA TCNNNNAAGN NGAGCAAGTA NATATCACAT GATCAGNCTA 
    ATTTCCATCT CCCATAATTT CCTTCATTTG GGGAATTATT TCTNTATNAN 
    NNNNNNAGNA GGGNANAANA TGNGGGAGCN CNNNANTNAG GGGGGGGGGG 
    NANGNNGGCC GGNNGNNNNN NNNNGNNNGA AAGGAGGNNG CNNGNGNGGG 
    NAAGNNNNNN GNGNGNGGNG NGGGGGGNNN NGGAGNAGAA NACNNGNNNN 
    ANGGNCGGGG NNGNGNGGGN GGNGGNNNNG NGGGNNNGGN NNCNAGGGNN 
    GGGNGNGGGG GGGNNNNGGG GGNGNGGNGG NNGGGGGGGG CNGGCAGAGN 
    NGNGGGNGGG NGNCGCGNGG GGNNGGGGGG GAGGGGNNGC NGNGGGGNGN 
    GNNNGGGGGN GGGNNCNAGA NNGCNNANNG NNGGGCNCNA ANNGGNCNGN 
    CGNGNGNGCN CCGNACNNGN NNGGCGCCNN CNNNGNNANN NNNGGCGGNN 
    GNNGNGNGCN GNGNNNNGNG CGG

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR