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12-0439-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21689819 [Map]; Strand: c
      • AT1G58380.1 - [+] show detail - Ribosomal protein S5 family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-0439-1 - 5-prime edge 
    GTTAAAGATN AATCACAGAA TTCTTCAGCT AGACATAATC NAACACNTCA 
    ATGAATCTGC CANAAGAAGG ACCAAAATCA AACCTTGACA AAGNNTCCAA 
    GAGTTTTAGT AGATCCTCTA GAAGAAGTAA AGACATCATC AATACCAGCA 
    AACTGAAGAA CCTTCTTAGG AACCCTAGCA GCAACAATAC CAGAACCTCT 
    CGGAGCAGGA ACCATCCTCA CAGTAACAGA ACCACACTTC CCAGTAACCT 
    TACAAGGCAC AGTGTGTGGC TTCCCAATCT TATTCCCCCA GTAACCTCTC 
    CTCACCGGAA CCACTGAGAG CTTAGCAAGA ATAATAGCTC CTCTAATGGC 
    AGTAGCAACT TCCTTAGAAC ACTTGACACC CAATCCAACA TGACCATTAC 
    CATCACCAAC AACAACAAAG GCCTTGAATC TAGTCCTTTG ACCAGCTCTG 
    GTTTGTTTCT GAACAGGCAT GATCTTCATA ACCTCGTCTT TCAACGTAGG 
    TCCAACAAGA TGATCTATGA TTTGGTACTC CTTAACGGGG AGAGAATGAA 
    GATAGATC

AT1G58380.1

Model type
Protein coding
Short Description
Ribosomal protein S5 family protein
Computational Description
XW6; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, chloroplast, membrane; EXPRESSED IN: guard cell, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 10515 Blast hits to 9714 proteins in 2923 species: Archae - 262; Bacteria - 5279; Metazoa - 1538; Fungi - 549; Plants - 325; Viruses - 26; Other Eukaryotes - 2536 (source: NCBI BLink).
Link
InterPro Scan - TAIR