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12-0443-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2027272 [Map]; Strand: w
      • AT2G05520.6 - [+] show detail - glycine-rich protein 3
        Distance: 155; Region: intergenic
      • AT2G05530.1 - [+] show detail - Glycine-rich protein family
        Distance: -2440; Region: intergenic
    Flanking Genome Sequence: 12-0443-1 - 3-prime edge 
    GCTTTGGGCA CATCAAATCT TCTAAGATAT TTTTTCTGGC ACTTTCATAT 
    ATTTAGTGAA GTTTGAAATG TTGGTGACAA ATCCTCAATA GAGTCTCTAG 
    GTGTCTGGTC TTTTCATTTA TGAAATGTAA TTCCTCAGCC AGAGACATAT 
    TTACATCTAT TTTTCTCGCC CACCCTGAGC GTATGTATAA TGATATAACA 
    CTGTTACAAA AAAACGAAAG AGATTAACAT AAACTACAAA CGATTTTATT 
    ATGCAAACAG CAAGTATTAC AACTCAAACC ACATAAAACA TTACATAATC 
    AAACTTTATT CCCATAGTTC TCTTCTTAAT CTATAGTGCC TCAAAAACTT 
    GAGGCAGTTC ATTACAAACG CACCATGGTT TACTTAAAAT CATACACACA 
    TAATGCAATA CATGCATGGT GGTGATTGGT TAATATATTG TTTTAGTGAC 
    CGGGCTGAGT CTGAACAGCT TCTCCGGCAT ACGAGCAGCA TCTTGAGCAG 
    CCGTTGTAAC CTCTGTAGCA GCAGCCGTGG CGGCAGTAAC TTCCCCCACT 
    TCCCCCTCCT NCTTGTCGCC CACCGNCTCC TTGGTATCGN CCTCCTCCTC 
    CTTGGGNCCG GCCTCCTCCT CCTNGGNNTN TTCCCTCCNN CCNCNTGGGN 
    AANNNCCCCC CCNCNNNNNN GGNANNNCNN NCNCC

AT2G05520.6

Model type
Protein coding
Short Description
glycine-rich protein 3
Curator Summary
Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.
Computational Description
glycine-rich protein 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT2G05530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G05530.1

Model type
Protein coding
Short Description
Glycine-rich protein family
Computational Description
Glycine-rich protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 (TAIR:AT2G05520.5); Has 32113 Blast hits to 9490 proteins in 861 species: Archae - 8; Bacteria - 10040; Metazoa - 11064; Fungi - 1844; Plants - 5235; Viruses - 311; Other Eukaryotes - 3611 (source: NCBI BLink).
Link
InterPro Scan - TAIR