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12-0479-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22320926 [Map]; Strand: w
      • AT1G60590.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -3956; Region: intergenic
      • AT1G60600.1 - [+] show detail - UbiA prenyltransferase family protein
        Distance: 3719; Region: intergenic
    Flanking Genome Sequence: 12-0479-1 - 5-prime edge 
    GGGGAGAGAT CCCATGGGCA TTATGACAAA TTTGTGTGTG TCTGTATATG 
    TACACAAATC AAGATGCTTT CATAACTTTC TAATGTTCTT GTCATAAAAT 
    GTTCCTTTCT CATTAAATTC ATAAAATGTC ACCTGTTCAT TGCTACACGA 
    GACGTATTAG TAATTAAGTA TAAGAAACAA TAACCCTTTT CATTTCATTT 
    ATTCTTGAAG GATCTTGAAG AATCGGGAGT TTTTGTCATA AAACCATTTA 
    CTATCCCTGT TTTTTTCTTC AATAATACCA CCACAATCTG CATATGTTTG 
    ATAAATTTAT TGGTTAGCTA TATTTTTAAT AAATATATAT AGGTTAGTTT 
    TGTCGTGCAA CCATTTAGTA CGTAGCACTG GCTTTTCTTG AAACAGAGAA 
    GTATTTCCAC CACCACAATG CATATGTTCA AAATTCAATG AAATTCCAAG 
    TAGATTGTTT TTAGCTAGAT GTAGATATGA GACACGGATT TTACTGTGAG 
    CTATATTTAA TTAGTGATGA TCGTTTCTAT CAATAGCGTT TGTGTTTTCT 
    TTCATAGCTA GATTATATTG ATTGGTTATC TTCATTTTTT GTGTGGAATT 
    AATTGAATTT TCGTTCCACA CTCCTAATTT GGTGGTTTCA TTGAAAGTTG 
    ATAAAAAAGA TAATAATTGG ATAATATATA AANGGAATAC ANTNTTATTA 
    CAAGCCCTCC TTTGACTTC

AT1G60590.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G10640.1); Has 4525 Blast hits to 4468 proteins in 546 species: Archae - 6; Bacteria - 1298; Metazoa - 151; Fungi - 1295; Plants - 1596; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60600.1

Model type
Protein coding
Short Description
UbiA prenyltransferase family protein
Curator Summary
Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.
Computational Description
ABERRANT CHLOROPLAST DEVELOPMENT 4 (ABC4); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537), 1,4-dihydroxy-2-naphthoate phytyltransferase (InterPro:IPR011937); Has 2128 Blast hits to 2126 proteins in 766 species: Archae - 57; Bacteria - 1544; Metazoa - 40; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 438 (source: NCBI BLink).
Link
InterPro Scan - TAIR