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12-0487-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7282468 [Map]; Strand: w
      • AT3G20820.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 291; Region: intergenic
      • AT3G20830.1 - [+] show detail - AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
        Distance: 2495; Region: intergenic
    Flanking Genome Sequence: 12-0487-1 - 3-prime edge 
    TGTATTTGGC TCTAGAATAA ATGTTCTTAA ACAAACCCAA CTAAATGCAT 
    TCCTAGTCTA TAGTTATATG TATATCGTAT AAAATATGTA AGAAAAAACA 
    AAAAATAGTT TACTCGATAC ATTAAATACG AACATATCCG TAGGTATTTC 
    CATGTATATC CTATGTTCGG ATATATTCCC AATATTGACT CTTGTCACAG 
    TAAACATAAT TGATTATCAA ATATGTTCGT GTGTTATAGA GAAAATTTAA 
    TCGTCTATAA AACAGTTTAT AGTAATCGTA TACGTACACA TATAACATAT 
    TACAAAAAAC CAAACAATTG AATTAAAAAT GATAGCAATC GTGTGACGAA 
    TGAAACTGGA AGTTTATATA TTTTGTTAAT CATCCCATAA TTCAACTAAA 
    CGTAGCATAC AATTTTAAAT CTTTTTTTTA TAAAATGCAT AACCATAAAT 
    ATAATAATGT CTCTAATGAA AAAACTCAAA TTACATATAA AAATCAATTT 
    TTCAAGCAAG CTCTTAAAGG TTTACCACAA AGACAGTCGT TAAACATAAA 
    CGACGCCGCT TCAAGATGAT CAAACGGNGA ACCTACCGGA ATCCTCCCAC 
    AGAGATGGTT ATGGGCTAAG ATCCAAATGA CCAATAAACG ACGCCCCCTG 
    AGATCGATCT CGGTATTGGT CCCTTTCNNA TTATTATNCG ACAAATCAAG 
    AACTGNGAAG TAAGACCTTG

AT3G20820.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, defense response; LOCATED IN: apoplast, cell wall, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G12940.1); Has 70868 Blast hits to 23934 proteins in 998 species: Archae - 25; Bacteria - 4468; Metazoa - 12756; Fungi - 677; Plants - 48104; Viruses - 0; Other Eukaryotes - 4838 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20830.1

Model type
Protein coding
Short Description
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Computational Description
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: hypocotyl, male gametophyte, root, pedicel, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G51170.1); Has 85073 Blast hits to 71957 proteins in 2517 species: Archae - 46; Bacteria - 10831; Metazoa - 34711; Fungi - 11201; Plants - 11819; Viruses - 155; Other Eukaryotes - 16310 (source: NCBI BLink).
Link
InterPro Scan - TAIR