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12-0548-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10553091 [Map]; Strand: c
      • AT1G30080.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-0548-1 - 5-prime edge 
    NGGATAACNT GTAAAAATAA CAAAATTCNG TTATACANAT AACNGTCNGT 
    ACTGGATTTT CCCATCCTAN TTNCATTCCT NNNTCANACA ANGCGCNNGN 
    GGTACACAAC TANTCATGAG GTGCGCGTGA TGNCACACAC CCTANACNNA 
    AAATNTTGAC TANNNCTTTA CNGAGACGAT ANCANAGANN ANCCACNCTN 
    AAAANNNTNC CTACTCCTTG GCATCAACTA NGGTCAACTC TGAAACAATN 
    TTTCTNNNGG GGNNAAAGTT CTACAACTNT TGAGTTNNGT CCATATCAAT 
    AANACAANAA TCTATGACAC AAACCCTCNA GTGTTAACCT CATTTGCCAA 
    TTCCAATATC NAGCTCTTTG TCACCGTCAA AAATNAAATG CTTCCCANCT 
    TANTANACCC TNAACAAGCT GTCCAATGGG TCACTACCCN TATNAAACCC 
    TANTTTNCNG CCACCAANAT NNGNGGTATN NNCNNNNGNN ANNAANTATN 
    NNNTNNNNAN NANTNAANCC TTATNNGGNN NNNNANATAN NTNNNNTNNT 
    NNNNANANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10553115 [Map]; Strand: c
      • AT1G30080.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0548-1 - 3-prime edge 
    GACAGAAATA AGCAATTATT CAAAAACGAT ACCTAAGAAA GTCAAGGAAA 
    ATAGAAGAAG AACGATAGAG TTGGTCATGG CAATTCTGCT AAACATGTTA 
    GACATGGAGA AGAGAGAAAG AGGGAGATAA AGACTTGAGG GAGAAAGTGC 
    CTTGTAAGAG AATCAATGCA ATGAAATGTG GGGATAGATA TAGAGATGAA 
    GAATTGAGAA ATGGGACCAA GTAGGCGACG AATAATTATT AATTTATAAT 
    TTAGAGATAA TACTTTACTT TGCCTGCCTT TGTTTTATGG TGAGACATAG 
    GGTTTCTACA ATAAAAGTGA CAATATGATT AATTCCAAAA ATAATTCAAT 
    AAGTTATTTA AATTTATACT CGTTAGTTTT GTAATGGGAG TAGGTTTGGC 
    AATAGGTTTA TCTTATGGAA GTCTATTGTA AAAATAGATA GTGTTTGCCA 
    AAAACATTCT TTGTGAGGCA ACATGGGTTT CATAAAACAT TTTGGACCCA 
    AGAAGAAAAA AATATGACAT CTTAGATTGT CTCTTTCCAA CACATTGCCA 
    ACTATGTCAG TCCAAAAAAA AAAAAAAAAA AAAAAAGGGG CCNNAAAAAA 
    AACCCTTTTT TTTNANNAAN GGNAANGGGG GGAAAAAATN ANTTNNCCCC 
    CNTTAANGGG TTTTTNTNTT NANAAATNNN TTTTTTTNCC CCNNAAAAAA 
    AAAANNNTTT TTTTTTTGNN NNAAANTTNG GGGNAA

AT1G30080.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G18340.1); Has 2128 Blast hits to 2112 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 18; Plants - 2098; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR