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12-0595-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18035610 [Map]; Strand: w
      • AT4G38580.1 - [+] show detail - farnesylated protein 6
        Distance: 0; Region: exon2 (CDS)
      • AT4G38590.1 - [+] show detail - beta-galactosidase 14
        Distance: -482; Region: promoter
      • AT4G38590.2 - [+] show detail - beta-galactosidase 14
        Distance: -506; Region: promoter
    Flanking Genome Sequence: 12-0595-1 - 5-prime edge 
    ACGCTGCCGG TGTCTACGAC AAGAAGGCAC CCTCCGGTTA TGTCCGAAGA 
    GTCGACGACC CCGGAGTGTC GCAGCTGGCT CGTGCTAGCT CCACCGAGGT 
    CCGCTACACC ACTGCATTTA GCGACGAGAA CCCGGCGGCT TGTGTGGTCA 
    TGTGATGTCA TATGGACTAC TACTGTTTCA ATTTGTTATG GCTTAATTTA 
    ATGTCTTGTT TTGTACATTA ATACCATAAC GGTAGGTTTC TTGTTTTGCT 
    TTTAGTTCCT TGGTCTGTAT TCCTTACACT TTATGATTGC AATATGTGTT 
    TTTCCCTTTC TTCCAAAGAC TTTTAATGTT AATAAATATT TCTACCCAAA 
    ATTAAATTAT TTTCATTTAT GGTTTGTAAT TGTGAANAAA GCT

AT4G38580.1

Model type
Protein coding
Short Description
farnesylated protein 6
Curator Summary
putative farnesylated protein (At4g38580) mRNA, complete
Computational Description
farnesylated protein 6 (FP6); FUNCTIONS IN: metal ion binding; INVOLVED IN: heat acclimation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT4G35060.1); Has 1169 Blast hits to 1088 proteins in 38 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38590.1

Model type
Protein coding
Short Description
beta-galactosidase 14
Curator Summary
putative beta-galactosidase (BGAL14 gene)
Computational Description
beta-galactosidase 14 (BGAL14); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 23317 Blast hits to 9736 proteins in 810 species: Archae - 62; Bacteria - 1372; Metazoa - 9840; Fungi - 2130; Plants - 1323; Viruses - 462; Other Eukaryotes - 8128 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38590.2

Model type
Protein coding
Short Description
beta-galactosidase 14
Curator Summary
putative beta-galactosidase (BGAL14 gene)
Computational Description
beta-galactosidase 14 (BGAL14); FUNCTIONS IN: sugar binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 3072 Blast hits to 2969 proteins in 587 species: Archae - 15; Bacteria - 892; Metazoa - 685; Fungi - 433; Plants - 695; Viruses - 19; Other Eukaryotes - 333 (source: NCBI BLink).
Link
InterPro Scan - TAIR