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12-0682-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27096405 [Map]; Strand: c
      • AT1G71970.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 2378; Region: intergenic
      • AT1G71980.1 - [+] show detail - Protease-associated (PA) RING/U-box zinc finger family protein
        Distance: -1498; Region: intergenic
    Flanking Genome Sequence: 12-0682-1 - 3-prime edge 
    CGAATCAGAG TCCATTTTGA TGTGAAGGCA TCAAATCTGC AAAATTAAAT 
    CAAGTTTCTT GAGCGATAAA CAAGCTGATG ATATCATTCT TGCACTTGGA 
    GTATTTTCTA CAACATAACC TAAGCCGGTG GTTATTTAAT AATGTTTAGT 
    AATCTTGAAT T

AT1G71970.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71980.1

Model type
Protein coding
Short Description
Protease-associated (PA) RING/U-box zinc finger family protein
Computational Description
Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G22670.1); Has 15658 Blast hits to 9675 proteins in 411 species: Archae - 0; Bacteria - 271; Metazoa - 3014; Fungi - 1211; Plants - 4865; Viruses - 29; Other Eukaryotes - 6268 (source: NCBI BLink).
Link
InterPro Scan - TAIR